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Report for Sequence Feature Glyma.15g099300

Feature Type:gene_model
Chromosome:Gm15
Start:7723643
stop:7726161
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g099300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15560.1AT Deoxyxylulose-5-phosphate synthase JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0016114GO-bp terpenoid biosynthetic process EnsemblGenomesN/AIEA
GO:0016114GO-bp terpenoid biosynthetic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0008661GO-mf 1-deoxy-D-xylulose-5-phosphate synthase activity EnsemblGenomesN/AIEA
GO:0008661GO-mf 1-deoxy-D-xylulose-5-phosphate synthase activity JGI N/AIEA
PTHR11624Panther DEHYDROGENASE RELATED JGI N/AIEA
PTHR11624:SF20Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF02779PFAM Transketolase, pyrimidine binding domain JGI N/AIEA
PF02780PFAM Transketolase, C-terminal domain JGI N/AIEA
NONMEVIPP-PWYSoyCyc9 methylerythritol phosphate pathway I Plant Metabolic Network ISS
PWY-5121SoyCyc9 superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) Plant Metabolic Network ISS
PWY-7560SoyCyc9 methylerythritol phosphate pathway II Plant Metabolic Network ISS
GN7V-60312SoyCyc9-rxn 1-deoxy-D-xylulose-5-phosphate synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.15g099300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g099300
ParalogEvidenceComments
Glyma.13g213500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g099300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g10610 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g099300
>Glyma.15g099300.2 sequence-type=transcript locus=Glyma.15g099300 ID=Glyma.15g099300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAATTAATCTTTGACTTGCTATATTCATGACAGGTATGTAACTTGATTTGATTTTGCAGTGGTATCTAAGTTTGATCCAGCAACTGGAGAACAATTCAAGGCCAAGGCCACCACCAAGTCATATTCAACATACTTTGCAGAGGCTTTGATTGCAGAAGCAGAAGCTGACAAAGACATTATTGGAATTCATGCTGCGATGGGAGGTGGAACTGGCATGAATCACTTCCTTCGTCGTTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCTGTTACCTTTGCGGCAGGCTTGGCTTGTGAAGGTTTTAAGCCTTTTTGTGCAATTAACTCATCCTTCATGCAGAGAGCTTATGACCAGGTGGTGCATGATGTGGATTTGCAAAAGCTGCCTGTAAGATTTGGAATAGACAGAGCTGGATTAGTTGGACCAGATGGTTGCACACACTGTGGTGCATTTGATGTCACTTTTATGGCATGCCTCCCTAACATGGTGGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTTCATATGGTTGCCACTGCAGCTGCCATTGATGATCGACCCAGTTGTTTCCGATACCCGAGAGGGAATGGTGTTGGTGTTGAACTACCACCAGGGAATAAAGGCATTCCTCTTGAGATTGGGAAAGGTAGGATACTAATTGAAGGGGAAAGAGTGGCTTTGTTGGGCTATGGATCAACTGTTCAGAGCTGTGTGGCTGCTGCTACCCTCTTGGGAGATCTTGGCTTGCATGCAACAGTGGTGAATGCACGTTTCTGCAAGCCATTGGATCATTCCCTAATTCGAAGCCTTGCAAAATCGCACGAGGTTTTGATCACCGTGGAAGAAGGATCAATAGGAGGATTTGGGTCTCATGTTGCTCAGTTCATGGCCCTTGATGGCCTTCTTGATGGAAAATTGAAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTGACCATGGATCACCTGCTGACCAATTGAATGAAGCTAGACTTACACCATCTCACATAGCAGCAACAGTTTTCAATTTACTTGGACAGGCAAGAGAGGAACTAGAGGTCATGACAAAAGAGAAATGCAAAGAAGGGGTTCAATTTTCATCCCCTGAAATGTACAAAGTAGCGTGATTCACCTGGTGGAAGATGCAGATTGACACATAATAGTGCCTACTAGTTAGCTAGAATCTCAATTTTTTCCATGGGTATGCAAAAGCCTTTTGTGTTCTGTTATCTGCGCTGAAATTCATTAACTAATTGTGTTGTACAAAAAGTTTAGGTGGAAGGAAGGTTAGCCAATCTAGCACATTCGTGGGGGTAGAATTTATGCTCTTAGCGCAACCTTCTTCTCATTTGACAGTGTTTCTGTTTTATGATGTTTTAGGGGTGACAACCCCTGGTAGTATTATTGCTTTGTAACTATCCCTGGGCTTAGGCCCCTTTCATTTTCCCAAAAAAA
Coding sequences of Glyma.15g099300
>Glyma.15g099300.1 sequence-type=CDS polypeptide=Glyma.15g099300.1.p locus=Glyma.15g099300 ID=Glyma.15g099300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
CATGCGCATGGCATGATTAGCAGTTCTGGATCAACACTGTTTGAAGAGCTTGGACTTTACTATATAGGTCCCGTTGATGGTCATAACATGAATGATCTTGTTGCCATTCTCAATGAAGTTAAAAATACTGAAACAACTGGTCCCTGCGTGATCCATGTTGTCACTGAAAAAGGCCACGGATACCCTTATGCAGAAAGAGCAGCAGCCAAGTACCATGTGGTATCTAAGTTTGATCCAGCAACTGGAGAACAATTCAAGGCCAAGGCCACCACCAAGTCATATTCAACATACTTTGCAGAGGCTTTGATTGCAGAAGCAGAAGCTGACAAAGACATTATTGGAATTCATGCTGCGATGGGAGGTGGAACTGGCATGAATCACTTCCTTCGTCGTTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCTGTTACCTTTGCGGCAGGCTTGGCTTGTGAAGGTTTTAAGCCTTTTTGTGCAATTAACTCATCCTTCATGCAGAGAGCTTATGACCAGGTGGTGCATGATGTGGATTTGCAAAAGCTGCCTGTAAGATTTGGAATAGACAGAGCTGGATTAGTTGGACCAGATGGTTGCACACACTGTGGTGCATTTGATGTCACTTTTATGGCATGCCTCCCTAACATGGTGGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTTCATATGGTTGCCACTGCAGCTGCCATTGATGATCGACCCAGTTGTTTCCGATACCCGAGAGGGAATGGTGTTGGTGTTGAACTACCACCAGGGAATAAAGGCATTCCTCTTGAGATTGGGAAAGGTAGGATACTAATTGAAGGGGAAAGAGTGGCTTTGTTGGGCTATGGATCAACTGTTCAGAGCTGTGTGGCTGCTGCTACCCTCTTGGGAGATCTTGGCTTGCATGCAACAGTGGTGAATGCACGTTTCTGCAAGCCATTGGATCATTCCCTAATTCGAAGCCTTGCAAAATCGCACGAGGTTTTGATCACCGTGGAAGAAGGATCAATAGGAGGATTTGGGTCTCATGTTGCTCAGTTCATGGCCCTTGATGGCCTTCTTGATGGAAAATTGAAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTGACCATGGATCACCTGCTGACCAATTGAATGAAGCTAGACTTACACCATCTCACATAGCAGCAACAGTTTTCAATTTACTTGGACAGGCAAGAGAGGAACTAGAGGTCATGACAAAAGAGAAATGCAAAGAAGGGGTTCAATTTTCATCCCCTGAAATGTACAAAGTAGCGTGA

>Glyma.15g099300.2 sequence-type=CDS polypeptide=Glyma.15g099300.2.p locus=Glyma.15g099300 ID=Glyma.15g099300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGGTGGAACTGGCATGAATCACTTCCTTCGTCGTTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCTGTTACCTTTGCGGCAGGCTTGGCTTGTGAAGGTTTTAAGCCTTTTTGTGCAATTAACTCATCCTTCATGCAGAGAGCTTATGACCAGGTGGTGCATGATGTGGATTTGCAAAAGCTGCCTGTAAGATTTGGAATAGACAGAGCTGGATTAGTTGGACCAGATGGTTGCACACACTGTGGTGCATTTGATGTCACTTTTATGGCATGCCTCCCTAACATGGTGGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTTCATATGGTTGCCACTGCAGCTGCCATTGATGATCGACCCAGTTGTTTCCGATACCCGAGAGGGAATGGTGTTGGTGTTGAACTACCACCAGGGAATAAAGGCATTCCTCTTGAGATTGGGAAAGGTAGGATACTAATTGAAGGGGAAAGAGTGGCTTTGTTGGGCTATGGATCAACTGTTCAGAGCTGTGTGGCTGCTGCTACCCTCTTGGGAGATCTTGGCTTGCATGCAACAGTGGTGAATGCACGTTTCTGCAAGCCATTGGATCATTCCCTAATTCGAAGCCTTGCAAAATCGCACGAGGTTTTGATCACCGTGGAAGAAGGATCAATAGGAGGATTTGGGTCTCATGTTGCTCAGTTCATGGCCCTTGATGGCCTTCTTGATGGAAAATTGAAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTGACCATGGATCACCTGCTGACCAATTGAATGAAGCTAGACTTACACCATCTCACATAGCAGCAACAGTTTTCAATTTACTTGGACAGGCAAGAGAGGAACTAGAGGTCATGACAAAAGAGAAATGCAAAGAAGGGGTTCAATTTTCATCCCCTGAAATGTACAAAGTAGCGTGA
Predicted protein sequences of Glyma.15g099300
>Glyma.15g099300.1.p sequence-type=predicted peptide transcript=Glyma.15g099300.1 locus=Glyma.15g099300 ID=Glyma.15g099300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
HAHGMISSSGSTLFEELGLYYIGPVDGHNMNDLVAILNEVKNTETTGPCVIHVVTEKGHGYPYAERAAAKYHVVSKFDPATGEQFKAKATTKSYSTYFAEALIAEAEADKDIIGIHAAMGGGTGMNHFLRRFPTRCFDVGIAEQHAVTFAAGLACEGFKPFCAINSSFMQRAYDQVVHDVDLQKLPVRFGIDRAGLVGPDGCTHCGAFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGVGVELPPGNKGIPLEIGKGRILIEGERVALLGYGSTVQSCVAAATLLGDLGLHATVVNARFCKPLDHSLIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPMVLPDCYIDHGSPADQLNEARLTPSHIAATVFNLLGQAREELEVMTKEKCKEGVQFSSPEMYKVA*

>Glyma.15g099300.2.p sequence-type=predicted peptide transcript=Glyma.15g099300.2 locus=Glyma.15g099300 ID=Glyma.15g099300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGGTGMNHFLRRFPTRCFDVGIAEQHAVTFAAGLACEGFKPFCAINSSFMQRAYDQVVHDVDLQKLPVRFGIDRAGLVGPDGCTHCGAFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGVGVELPPGNKGIPLEIGKGRILIEGERVALLGYGSTVQSCVAAATLLGDLGLHATVVNARFCKPLDHSLIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPMVLPDCYIDHGSPADQLNEARLTPSHIAATVFNLLGQAREELEVMTKEKCKEGVQFSSPEMYKVA*






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