Glyma.15g098400

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Report for Sequence Feature Glyma.15g098400

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7651712
stop:	7654753
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g098400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08820.1	AT	vamp/synaptobrevin-associated protein 27-2	JGI	N/A	IEA
GO:0005789	GO-cc	endoplasmic reticulum membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0005198	GO-mf	structural molecule activity	JGI	N/A	IEA
PTHR10809	Panther	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN	JGI	N/A	IEA
PTHR10809:SF6	Panther	AT11025P-RELATED	JGI	N/A	IEA
PF00635	PFAM	MSP (Major sperm protein) domain	JGI	N/A	IEA

Expression Patterns of Glyma.15g098400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g098400 not represented in the dataset	Glyma.15g098400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g098400

Paralog	Evidence	Comments
Glyma.13g214700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g098400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g10510	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g098400

Limit To All Plant Sequences

>Glyma.15g098400.2 sequence-type=transcript locus=Glyma.15g098400 ID=Glyma.15g098400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACAGGACAAGAAAGGATGGTAAGTTTACAAGCAGTGGGTCGCAGTCTCACACCCTCACACCCTCCTTCCTCACGTAACCAACGCCACCAGCACCAATCCAATGCCCTCTTTTCTCTCTCTCATAGTCTCATTTTCCCATTCGTTCACTCATAGTTCCTAACACACACTGTCTCTGATCCTGCATTATTGTTGACAACATGGCCACGGAGCTTCTCCAAATTGATCCCCCTCAGCTCACTTTTACCTTTGAATTGAAGAAACAGAGTTCCTGCTTGGTTCATCTCATCAACAACAACTCTTCTCACCATGTCGCCTTCAAGGTCAAAACCACGTCGCCCAAGAAATACTGCGTCAGACCAACTGTCGGCATCGTCAAGCCACACGGAACATGTGATTTCACCGTTACTATGCAGGCTCAGCGCACAGCCCCACCTGATCTGCACTGCAAAGACAAGTTCCTCGTTCAAAGCGCGGTTGTCCCAAAAGGAACAACCGAGGATGAAATCTCCTCTGACCTGTTTGTCAAAGATAGTGGAAGGCTTGTTGATGAGAAGAAGCTAAGGGTGGTCCTCATTAACTCACCTTCTTCCCCTGTAAATGGAGATCTCAAGCAGGATCCACCCAGTCAAATGCTTCCCTCCCTTACAGCTGAAAAAGGTATGGAAGCAGCTCAGGATATGGAGGAGGATGGAGCTGATAAGGGAACTTTTCCAAGTACAAGGAGTGTTGAGAAGGTGGGGGACATGAAGCAAGTAAATGATGCTGTGAATTTGAGTTTTGCTACTAAGGATTCCGAGGAATTGAAGTCAAGGTTGAGTATAATGGATGCAAAGCTAAGAGAGGCTGAAGGAACCATCATGAAGTTGAATGAAGAGAGGCGCAGGAACATCCGAGAAAAAGATTTGCTGAAGCAAGAGTTGATGTTGAAGAAGAAAATTAAGATGAAAAGAGCTCAGGAGGGATTCCCGTTACTGTTTGTCTGTGTGGTTTCGATTGTCAGTATGGCAGTCGGATATTATATTCATCCATAAGGGGGAATTGAGTATAGTCACAGATGTTCCAAAATCATGGTGTTCTCCTTAATGATTCGATAGAGGACAATTCGTTGTTAATTCTTATGGTTACACTCGACGAATGTTAATATGTGATACGTTGGAACCTTCCTTTCTGAATTGCTTGTAAAATCAACTACATCTATTAAGAAGAGAATCATAATATGCAGCCAACTGATATTTGGAGCCAAA

Coding sequences of Glyma.15g098400

Limit To All Plant Sequences

>Glyma.15g098400.1 sequence-type=CDS polypeptide=Glyma.15g098400.1.p locus=Glyma.15g098400 ID=Glyma.15g098400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACGGAGCTTCTCCAAATTGATCCCCCTCAGCTCACTTTTACCTTTGAATTGAAGAAACAGAGTTCCTGCTTGGTTCATCTCATCAACAACAACTCTTCTCACCATGTCGCCTTCAAGGTCAAAACCACGTCGCCCAAGAAATACTGCGTCAGACCAACTGTCGGCATCGTCAAGCCACACGGAACATGTGATTTCACCGTTACTATGCAGGCTCAGCGCACAGCCCCACCTGATCTGCACTGCAAAGACAAGTTCCTCGTTCAAAGCGCGGTTGTCCCAAAAGGAACAACCGAGGATGAAATCTCCTCTGACCTGTTTGTCAAAGATAGTGGAAGGCTTGTTGATGAGAAGAAGCTAAGGGTGGTCCTCATTAACTCACCTTCTTCCCCTGTAAATGGAGATCTCAAGCAGGATCCACCCAGTCAAATGCTTCCCTCCCTTACAGCTGAAAAAGGTATGGAAGCAGCTCAGGATATGGAGGAGGATGGAGCTGATAAGGGAACTTTTCCAAGTACAAGGAGTGTTGAGAAGGTGGGGGACATGAAGCAAGTAAATGATGCTGTGAATTTGAGTTTTGCTACTAAGGATTCCGAGGAATTGAAGTCAAGGTTGAGTATAATGGATGCAAAGCTAAGAGAGGCTGAAGGAACCATCATGAAGTTGAATGAAGAGAGGCGCAGGAACATCCGAGAAAAAGATTTGCTGAAGCAAGAGTTGGAGATGTTGAAGAAGAAAATTAAGATGAAAAGAGCTCAGGAGGGATTCCCGTTACTGTTTGTCTGTGTGGTTTCGATTGTCAGTATGGCAGTCGGATATTATATTCATCCATAA

>Glyma.15g098400.2 sequence-type=CDS polypeptide=Glyma.15g098400.2.p locus=Glyma.15g098400 ID=Glyma.15g098400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACGGAGCTTCTCCAAATTGATCCCCCTCAGCTCACTTTTACCTTTGAATTGAAGAAACAGAGTTCCTGCTTGGTTCATCTCATCAACAACAACTCTTCTCACCATGTCGCCTTCAAGGTCAAAACCACGTCGCCCAAGAAATACTGCGTCAGACCAACTGTCGGCATCGTCAAGCCACACGGAACATGTGATTTCACCGTTACTATGCAGGCTCAGCGCACAGCCCCACCTGATCTGCACTGCAAAGACAAGTTCCTCGTTCAAAGCGCGGTTGTCCCAAAAGGAACAACCGAGGATGAAATCTCCTCTGACCTGTTTGTCAAAGATAGTGGAAGGCTTGTTGATGAGAAGAAGCTAAGGGTGGTCCTCATTAACTCACCTTCTTCCCCTGTAAATGGAGATCTCAAGCAGGATCCACCCAGTCAAATGCTTCCCTCCCTTACAGCTGAAAAAGGTATGGAAGCAGCTCAGGATATGGAGGAGGATGGAGCTGATAAGGGAACTTTTCCAAGTACAAGGAGTGTTGAGAAGGTGGGGGACATGAAGCAAGTAAATGATGCTGTGAATTTGAGTTTTGCTACTAAGGATTCCGAGGAATTGAAGTCAAGGTTGAGTATAATGGATGCAAAGCTAAGAGAGGCTGAAGGAACCATCATGAAGTTGAATGAAGAGAGGCGCAGGAACATCCGAGAAAAAGATTTGCTGAAGCAAGAGTTGATGTTGAAGAAGAAAATTAAGATGAAAAGAGCTCAGGAGGGATTCCCGTTACTGTTTGTCTGTGTGGTTTCGATTGTCAGTATGGCAGTCGGATATTATATTCATCCATAA

Predicted protein sequences of Glyma.15g098400

Limit To All Plant Sequences

>Glyma.15g098400.1.p sequence-type=predicted peptide transcript=Glyma.15g098400.1 locus=Glyma.15g098400 ID=Glyma.15g098400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATELLQIDPPQLTFTFELKKQSSCLVHLINNNSSHHVAFKVKTTSPKKYCVRPTVGIVKPHGTCDFTVTMQAQRTAPPDLHCKDKFLVQSAVVPKGTTEDEISSDLFVKDSGRLVDEKKLRVVLINSPSSPVNGDLKQDPPSQMLPSLTAEKGMEAAQDMEEDGADKGTFPSTRSVEKVGDMKQVNDAVNLSFATKDSEELKSRLSIMDAKLREAEGTIMKLNEERRRNIREKDLLKQELEMLKKKIKMKRAQEGFPLLFVCVVSIVSMAVGYYIHP*

>Glyma.15g098400.2.p sequence-type=predicted peptide transcript=Glyma.15g098400.2 locus=Glyma.15g098400 ID=Glyma.15g098400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATELLQIDPPQLTFTFELKKQSSCLVHLINNNSSHHVAFKVKTTSPKKYCVRPTVGIVKPHGTCDFTVTMQAQRTAPPDLHCKDKFLVQSAVVPKGTTEDEISSDLFVKDSGRLVDEKKLRVVLINSPSSPVNGDLKQDPPSQMLPSLTAEKGMEAAQDMEEDGADKGTFPSTRSVEKVGDMKQVNDAVNLSFATKDSEELKSRLSIMDAKLREAEGTIMKLNEERRRNIREKDLLKQELMLKKKIKMKRAQEGFPLLFVCVVSIVSMAVGYYIHP*

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