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Report for Sequence Feature Glyma.15g097000

Feature Type:gene_model
Chromosome:Gm15
Start:7536232
stop:7544224
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g097000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18620.2AT chromatin remodeling factor17 JGI N/AIEA
GO:0006325GO-bp chromatin organization EnsemblGenomesN/AIEA
GO:0006338GO-bp chromatin remodeling EnsemblGenomesN/AIEA
GO:0006338GO-bp chromatin remodeling JGI N/AIEA
GO:0016569GO-bp covalent chromatin modification EnsemblGenomesN/AIEA
GO:0043044GO-bp ATP-dependent chromatin remodeling EnsemblGenomesN/AIEA
GO:0043044GO-bp ATP-dependent chromatin remodeling JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0016589GO-cc NURF complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0004386GO-mf helicase activity EnsemblGenomesN/AIEA
GO:0004386GO-mf helicase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0016817GO-mf hydrolase activity, acting on acid anhydrides JGI N/AIEA
GO:0016818GO-mf hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides EnsemblGenomesN/AIEA
GO:0016818GO-mf hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0031491GO-mf nucleosome binding EnsemblGenomesN/AIEA
GO:0031491GO-mf nucleosome binding JGI N/AIEA
KOG0385 KOG Chromatin remodeling complex WSTF-ISWI, small subunit JGI N/AIEA
PTHR10799Panther SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED JGI N/AIEA
PTHR10799:SF73Panther CHROMATIN-REMODELING COMPLEX ATPASE CHAIN ISWI JGI N/AIEA
PF00176PFAM SNF2 family N-terminal domain JGI N/AIEA
PF00271PFAM Helicase conserved C-terminal domain JGI N/AIEA
PF09110PFAM HAND JGI N/AIEA
PF09111PFAM SLIDE JGI N/AIEA

Expression Patterns of Glyma.15g097000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g097000 not represented in the dataset
Glyma.15g097000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g097000
ParalogEvidenceComments
Glyma.13g215900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g097000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g10370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g097000
>Glyma.15g097000.1 sequence-type=CDS polypeptide=Glyma.15g097000.1.p locus=Glyma.15g097000 ID=Glyma.15g097000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAGACCTTCCAAGCTACACTCATCTTCCGACGAAGCGCTCTCCAATGCTTCGAGTTCCTCCGATGAAGAGGAGCAAGTCAACGAGCAGATCAACGAAGAGGAAGACGAGGAGGAGCTCGAGGCGGTGGCGCGCCCTGCCAGTTCTGCTGACGACGACGACGAAGTCGCCGGCGACAATCCGCCGGACTCCGATGAAGATCCAGCCGCCGATGACGCTGACGATGACCAGGATGGGGATAATGTTGATCCCGAAATTAGCAAGCGAGAGAAGGCGAGATTAAAAGAAATGCAGAAAATGAAGAAACAGAAGATTCAGGAGATACTGGATGTACAGAATGCGGCCATTGACGCTGACATGAACAATAGAGGGAAGGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGGGATCAATCTTCGTCTCAGAAGAAGTCAAGGGGAAGGGGTCGCCATGCATCCAATTTCACCGAGGAAGAAGAAGATGAAGAATACCTAAAAGGAGAAGAAGATGGTCTAGCAAACACACGTCTGGTGACACAACCATCATGTATCCAAGGGAAAATGAGGGATTACCAGCTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCCTTATTAGGTTATTTGCACGAGTTCCGAGGAATCAAAGGTCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATCAAGTTTCTTGGCAACCCCGATGAAAGGAGACATATCAGAGATGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTACCGTCTCCTTATTACTGGCACGCCACTTCAGAATAACCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGATTGCCACCAAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAAATGCAGAAACAGTATTATAGAGCCCTACTTCAGAAGGATCTTGAGGTTGTAAACGCTGGTGGTGAACGGAAGCGCCTCCTGAACATAGCTATGCAACTCCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTTATTGAAAACGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTCGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGTACTGAGTATACAATAGAAGAGAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAATTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAAGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTAGATGCCAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCCGAGTTATATGATTTTGATGATGAGAAGGATGAAAGCAGATTTGATATAAAAAAAATTGTGAGTGAGAACTGGATTGAACCACCCAAAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACCAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAATTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACACCAGAGGAATCAGATAAAGGATTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACAGCTGAAGAGTTGGAAGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCTTCATGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGCGAAAAATATGGCCGAAATGATATACAAAGTATTGCTTCTGAGATGGAAGGAAAAACCGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGAAAGAAGTTGGACCGCTACAAGAATCCGTGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTGCACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTCAAATCTCGCACCACTCAAGAACTGGCTAGGAGGTGTGACACCCTCATTCGACTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAAAGCATGACCCCATCGAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGGGGAAGAGAAGAAAATAA
Predicted protein sequences of Glyma.15g097000
>Glyma.15g097000.1.p sequence-type=predicted peptide transcript=Glyma.15g097000.1 locus=Glyma.15g097000 ID=Glyma.15g097000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARPSKLHSSSDEALSNASSSSDEEEQVNEQINEEEDEEELEAVARPASSADDDDEVAGDNPPDSDEDPAADDADDDQDGDNVDPEISKREKARLKEMQKMKKQKIQEILDVQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASNFTEEEEDEEYLKGEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIRDELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLIENAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDESRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQRNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIQSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTESPSSLKKRKQLTMDDYASTGKRRK*






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