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Report for Sequence Feature Glyma.15g078600

Feature Type:gene_model
Chromosome:Gm15
Start:6035650
stop:6037148
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g078600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G28480.1AT Thioredoxin superfamily protein JGI N/AIEA
GO:0022900GO-bp electron transport chain EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
GO:0009055GO-mf electron transfer activity EnsemblGenomesN/AIEA
GO:0009055GO-mf electron carrier activity JGI N/AIEA
GO:0015035GO-mf protein disulfide oxidoreductase activity EnsemblGenomesN/AIEA
GO:0015035GO-mf protein disulfide oxidoreductase activity JGI N/AIEA
KOG1752 KOG Glutaredoxin and related proteins JGI N/AIEA
PTHR10168Panther GLUTAREDOXIN JGI N/AIEA
PTHR10168:SF47Panther GLUTAREDOXIN-1-RELATED JGI N/AIEA
PF00462PFAM Glutaredoxin JGI N/AIEA
THIOREDOX-PWYSoyCyc9 thioredoxin pathway Plant Metabolic Network ISS
GN7V-66581SoyCyc9-rxn thioredoxin-disulfide reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.15g078600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g078600
ParalogEvidenceComments
Glyma.13g234500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g078600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g08520 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g078600
>Glyma.15g078600.1 sequence-type=CDS polypeptide=Glyma.15g078600.1.p locus=Glyma.15g078600 ID=Glyma.15g078600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACCAAGCCATTCCCTACCGAACCTCCATCCTGACCGGAACATGTGACATGGCACACGCCGGAGGAATCAAAGAATTCAACCTCGCCAATCCATCCAACGTTGCCGCAATGGTTTCGGAGAGCGCAGTGGTAATCATTGGGAAACGGGGGTGCTGCATGTGCCACGTGGTCAAAAGGTTGTTGCAAGGTCTGGGAGTGAACCCTCCCGTGTACGAGGTCGACGAGGACCACGAAGCCGCCGTTGCTCGCCACCTGTTCCCGCAGGGCGCCGAAACGGTGCAGTTTCCGGCGGTGTTCCTCGCCGGCAAGTTGTTCGGAGGGTTGGAAAGAGTTATGGCAACTCATATCTCAGGTGAGTTGATTCCCATCTTGAAGGATGCTGGTGCTTTGTGGCTCTGA
Predicted protein sequences of Glyma.15g078600
>Glyma.15g078600.1.p sequence-type=predicted peptide transcript=Glyma.15g078600.1 locus=Glyma.15g078600 ID=Glyma.15g078600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHQAIPYRTSILTGTCDMAHAGGIKEFNLANPSNVAAMVSESAVVIIGKRGCCMCHVVKRLLQGLGVNPPVYEVDEDHEAAVARHLFPQGAETVQFPAVFLAGKLFGGLERVMATHISGELIPILKDAGALWL*






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