SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.15g069800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.15g069800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.15g069800

Feature Type:gene_model
Chromosome:Gm15
Start:5338752
stop:5342891
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g069800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16250.1AT Galactose oxidase/kelch repeat superfamily protein JGI N/AIEA
AT1G67480.1AT Galactose oxidase/kelch repeat superfamily protein JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0031463GO-cc Cul3-RING ubiquitin ligase complex EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR24412Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24412:SF249Panther JGI N/AIEA
PF01344PFAM Kelch motif JGI N/AIEA

Expression Patterns of Glyma.15g069800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g069800 not represented in the dataset
Glyma.15g069800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g069800
ParalogEvidenceComments
Glyma.13g243900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g069800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g07550 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g069800
>Glyma.15g069800.2 sequence-type=transcript locus=Glyma.15g069800 ID=Glyma.15g069800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACAACTGTCAACTCTCTTGCTATTCATTAACCTTCCCATCCCTATCAGCCTTAGCTGGACTTCTATGTTAGGTGTGATTCCCCAGTTTCCTCTTGGTGATTCTGTGCCCACTCACAGGCCTTAATCTGAAAAACCAAACCCACACAACATCGGTTTAATTTCTTATGCAAGCCCTTTTAAAATGTTATTCCCGTTTATGGCCATTAGTTTTGCAATCTTTGACTAGGCAACAAAGTTTTTTCTGTCACTATGTCTTTGTCACCCTTTGTTGCTTTGAATGATTCTTGATTCTTGACTGTATTCAGAACAAGCAATTAGTCGTCATCGTGCAACTTGGGAGCAAGTTCCCAAAAATTGAACAAACGAGGGGTTTCCTCCGTATGATATTAACCATAAAGGGCATCAAAGTTGTGGCAACAGTTCTCCGTTACAACATTAGAACCAATCAATGGTTCGATTGTGCACCACTAGGTGTGGCACGGTATGATTTTGCTTGCACCGTTTGTGAAAACAAAATCTACGTGGCTGGGGGGAAGTCCACGCTGGCATGTGCCGGGCCAGCGCATGGGATCTCATCGGCTGAGGTGTACGACCCGGATCATGACAGGTGGACCCCTTTGCCTAATTTGCGTATTTTAAGGTACAAGTGTATAGGTGTGACGTGGCAAGGGAAAGTTTACATAGTGGGAGGATTTGCTGAGAGAGAGGACTCGGATAAGACAATGGCAAGCATAGTGGAACGTAGCTCAGCTGAGGTGTATGACACGCAAGCAAGGAAGTGGGACCTGATAGCGGGGATGTGGCAATTGGATGTGCCACCTAATCAGATAGTGGCAGTGAATGGTACCCTTTTTAGTTCAGGGGATTGCTTGAATGCATGGAAGGGACATATTGAAGCCTATGATGGGAAACTTTGGAATGAAGTTGATGGATCACACAAGCGAAACCTGTCCACATTAGAGGACAACTATGAGAATTGGCCTCAGAATGATCAAAGACTGTACCTTACTATGGCACCAATTGGGACTCGTTTGTTTTTCTTGGCAGGTTACAGGATAGGAGGGGAACTACCAAGAACTATGTCTGTTGTGCACATGTTTGACACTTCAGCCACCAGGGATGCTTGGAGGAGCTTTGAACCAATGGAATTGGAGGGTGAGAAAGAGCTTTGTAGCCATTGCTGTGTTGTGCAACTCTCTTAATTGAGAGTTCAAAAGAAAATATGTACAATG
Coding sequences of Glyma.15g069800
>Glyma.15g069800.1 sequence-type=CDS polypeptide=Glyma.15g069800.1.p locus=Glyma.15g069800 ID=Glyma.15g069800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTCACTCCCTTCACCACCAAGACCAACAGCCCCACCATCCCCAGAAAATCTTCTTTCCAATCATGTAGTGGTTGCTGTGTTTTGTCCTAGAGAACCAGCCCCAGGTGTCAGTCTCCCTAATTCAATTGAGCTATATTACCCTTCCATGAACACATGGACCTATGTTGGCTCAATTCCTGGCCTAAGTGATCACCAAATCTTAAAGGGGTTTGCTATAGTCTCCCTAGGGGACTTTATTTACATAATTGGTGGCCAAATTTGTCACAAAGAAATGGTTCATGTGTCTGATGAGTGTGCTGACTACGTTGATCAGGGCATCAAAGTTGTGGCAACAGTTCTCCGTTACAACATTAGAACCAATCAATGGTTCGATTGTGCACCACTAGGTGTGGCACGGTATGATTTTGCTTGCACCGTTTGTGAAAACAAAATCTACGTGGCTGGGGGGAAGTCCACGCTGGCATGTGCCGGGCCAGCGCATGGGATCTCATCGGCTGAGGTGTACGACCCGGATCATGACAGGTGGACCCCTTTGCCTAATTTGCGTATTTTAAGGTACAAGTGTATAGGTGTGACGTGGCAAGGGAAAGTTTACATAGTGGGAGGATTTGCTGAGAGAGAGGACTCGGATAAGACAATGGCAAGCATAGTGGAACGTAGCTCAGCTGAGGTGTATGACACGCAAGCAAGGAAGTGGGACCTGATAGCGGGGATGTGGCAATTGGATGTGCCACCTAATCAGATAGTGGCAGTGAATGGTACCCTTTTTAGTTCAGGGGATTGCTTGAATGCATGGAAGGGACATATTGAAGCCTATGATGGGAAACTTTGGAATGAAGTTGATGGATCACACAAGCGAAACCTGTCCACATTAGAGGACAACTATGAGAATTGGCCTCAGAATGATCAAAGACTGTACCTTACTATGGCACCAATTGGGACTCGTTTGTTTTTCTTGGCAGGTTACAGGATAGGAGGGGAACTACCAAGAACTATGTCTGTTGTGCACATGTTTGACACTTCAGCCACCAGGGATGCTTGGAGGAGCTTTGAACCAATGGAATTGGAGGGTGAGAAAGAGCTTTGTAGCCATTGCTGTGTTGTGCAACTCTCTTAA

>Glyma.15g069800.2 sequence-type=CDS polypeptide=Glyma.15g069800.2.p locus=Glyma.15g069800 ID=Glyma.15g069800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATATTAACCATAAAGGGCATCAAAGTTGTGGCAACAGTTCTCCGTTACAACATTAGAACCAATCAATGGTTCGATTGTGCACCACTAGGTGTGGCACGGTATGATTTTGCTTGCACCGTTTGTGAAAACAAAATCTACGTGGCTGGGGGGAAGTCCACGCTGGCATGTGCCGGGCCAGCGCATGGGATCTCATCGGCTGAGGTGTACGACCCGGATCATGACAGGTGGACCCCTTTGCCTAATTTGCGTATTTTAAGGTACAAGTGTATAGGTGTGACGTGGCAAGGGAAAGTTTACATAGTGGGAGGATTTGCTGAGAGAGAGGACTCGGATAAGACAATGGCAAGCATAGTGGAACGTAGCTCAGCTGAGGTGTATGACACGCAAGCAAGGAAGTGGGACCTGATAGCGGGGATGTGGCAATTGGATGTGCCACCTAATCAGATAGTGGCAGTGAATGGTACCCTTTTTAGTTCAGGGGATTGCTTGAATGCATGGAAGGGACATATTGAAGCCTATGATGGGAAACTTTGGAATGAAGTTGATGGATCACACAAGCGAAACCTGTCCACATTAGAGGACAACTATGAGAATTGGCCTCAGAATGATCAAAGACTGTACCTTACTATGGCACCAATTGGGACTCGTTTGTTTTTCTTGGCAGGTTACAGGATAGGAGGGGAACTACCAAGAACTATGTCTGTTGTGCACATGTTTGACACTTCAGCCACCAGGGATGCTTGGAGGAGCTTTGAACCAATGGAATTGGAGGGTGAGAAAGAGCTTTGTAGCCATTGCTGTGTTGTGCAACTCTCTTAA
Predicted protein sequences of Glyma.15g069800
>Glyma.15g069800.1.p sequence-type=predicted peptide transcript=Glyma.15g069800.1 locus=Glyma.15g069800 ID=Glyma.15g069800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSLPSPPRPTAPPSPENLLSNHVVVAVFCPREPAPGVSLPNSIELYYPSMNTWTYVGSIPGLSDHQILKGFAIVSLGDFIYIIGGQICHKEMVHVSDECADYVDQGIKVVATVLRYNIRTNQWFDCAPLGVARYDFACTVCENKIYVAGGKSTLACAGPAHGISSAEVYDPDHDRWTPLPNLRILRYKCIGVTWQGKVYIVGGFAEREDSDKTMASIVERSSAEVYDTQARKWDLIAGMWQLDVPPNQIVAVNGTLFSSGDCLNAWKGHIEAYDGKLWNEVDGSHKRNLSTLEDNYENWPQNDQRLYLTMAPIGTRLFFLAGYRIGGELPRTMSVVHMFDTSATRDAWRSFEPMELEGEKELCSHCCVVQLS*

>Glyma.15g069800.2.p sequence-type=predicted peptide transcript=Glyma.15g069800.2 locus=Glyma.15g069800 ID=Glyma.15g069800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MILTIKGIKVVATVLRYNIRTNQWFDCAPLGVARYDFACTVCENKIYVAGGKSTLACAGPAHGISSAEVYDPDHDRWTPLPNLRILRYKCIGVTWQGKVYIVGGFAEREDSDKTMASIVERSSAEVYDTQARKWDLIAGMWQLDVPPNQIVAVNGTLFSSGDCLNAWKGHIEAYDGKLWNEVDGSHKRNLSTLEDNYENWPQNDQRLYLTMAPIGTRLFFLAGYRIGGELPRTMSVVHMFDTSATRDAWRSFEPMELEGEKELCSHCCVVQLS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo