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Report for Sequence Feature Glyma.15g067300

Feature Type:gene_model
Chromosome:Gm15
Start:5129271
stop:5134379
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g067300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G05020.1AT NAD(P)H dehydrogenase B2 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding JGI N/AIEA
KOG2495 KOG NADH-dehydrogenase (ubiquinone) JGI N/AIEA
PTHR22915Panther NADH DEHYDROGENASE-RELATED JGI N/AIEA
PTHR22915:SF4Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00070PFAM Pyridine nucleotide-disulphide oxidoreductase JGI N/AIEA
PF07992PFAM Pyridine nucleotide-disulphide oxidoreductase JGI N/AIEA
GN7V-43963SoyCyc9-rxn NADH:ubiquinone reductase (non-electrogenic) Plant Metabolic Network ISS

Expression Patterns of Glyma.15g067300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g067300
ParalogEvidenceComments
Glyma.13g246600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g067300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g07290 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g067300
>Glyma.15g067300.1 sequence-type=CDS polypeptide=Glyma.15g067300.1.p locus=Glyma.15g067300 ID=Glyma.15g067300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGAGTATCACTTTCTTCCAGCATCTCTCTAGAGCTTTCCGTGATAACCAGTCGCATCTTAAGCTTGTACTGCTCTGCACCGCCGTAAGTGGTGGTGGTCTTTGGGCTTATGGTGAGAGTGTTGCCCCAGAAGAGGCAGTTAGCGAGAAGAAGAAGGTGGTGGTGCTGGGAACTGGTTGGGCGGCCACAAGTTTTATGAAGAATTTGAAGAATCCAAAATATGAGGTTCAAGTAGTATCGCCTCGTAACTACTTTGCATTCACTCCTTTGCTGCCTAGCGTTACGTGCGGGACCGTCGAAGCGCGCAGCATTGTTGAGCCAGTTCGCAATATTTTTAAGAAAAAGGTGGACGTACAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCAGAAAATAGGAAAGTTTACTGTCGATCTAGTGTGAACAATAATTTGAATGGGAAAGAAGAATTTGTTGTGGATTATGACTACCTAATAGTTGCGGTGGGTGCTAATGTCAATACATTTAATACTCCAGGAGTGACGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCTAAAAAAATTAGAAGAACAGTTATTGACTGCTTCGAGAGAGCAAATTTGCCCGATGTAAGTGAAGATGAGAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGACCTACTGGAGTAGAGTTTGCAGCCTCACTTCATGATTTTGTCAATGAGGATTTGCTCCGTTTATATCCTGGGATTAAAGATTTAGTTAAAATTACACTTCTGGAGGCCGGAGATCATATCTTGGGCATGTTTGACAAGAGAATTACTACTTTTGCTGAAGACAAGTTTCGAAGAGACGGGATTGATGTGAAAACAGGATCCATGGTTGTTAAGGTATCCGAGAAAGAAATTTCCACTAAAGAACTGAAAAACGGAGGAGAGATTAAGACAATTCCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTCATGGCACAAATCGGTCAGGCTAGCAGGCGTGCTCTAGCTACAGACGAGTGGTTGAGAGTTGAAGGGTGCAGCAATGTCTATGCGCTTGGTGACTGTGCCACGATAAACCAGCGGAAAGTCATGGAAGATATCGTGGCGATCTTTAAGAAGGCTGACAAAGAGAGTTCCGGAACACTTACGGTCAAACAATTTCAAGAGGTCATGAAAGATATCTGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAACAGATGCACAACATTGCTGATTTATTGAAGGAAGCCAAGGGAGATGATAAAAAAGAATCAATTGAACTGAATATTGAAGAACTCAAAACTGCACTTTCCAAAGTGGATTCTCAAATGAAATTTCTTCCTGCTACAGCACAGGTTGCATCTCAGCAAGGCACTTACCTGGCCAAGTGTTTTAATCGGATGGAAGAGTGTGAAAAAAATCCTGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCACCATCGGTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGTACTAGAGCGTTAGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCAAGTAGCATCTGA
Predicted protein sequences of Glyma.15g067300
>Glyma.15g067300.1.p sequence-type=predicted peptide transcript=Glyma.15g067300.1 locus=Glyma.15g067300 ID=Glyma.15g067300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSITFFQHLSRAFRDNQSHLKLVLLCTAVSGGGLWAYGESVAPEEAVSEKKKVVVLGTGWAATSFMKNLKNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFKKKVDVQFSEAECFKIDAENRKVYCRSSVNNNLNGKEEFVVDYDYLIVAVGANVNTFNTPGVTENCHFLKEVEDAKKIRRTVIDCFERANLPDVSEDEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLLRLYPGIKDLVKITLLEAGDHILGMFDKRITTFAEDKFRRDGIDVKTGSMVVKVSEKEISTKELKNGGEIKTIPYGMAVWSTGIGTRPFIKDFMAQIGQASRRALATDEWLRVEGCSNVYALGDCATINQRKVMEDIVAIFKKADKESSGTLTVKQFQEVMKDICERYPQVELYLKNKQMHNIADLLKEAKGDDKKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPLRFRGEGHHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSSI*






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