Glyma.15g064500

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.15g064500

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4900235
stop:	4903742
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g064500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61660.1	AT	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	JGI	N/A	IEA
GO:0006366	GO-bp	transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0045944	GO-bp	positive regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0001046	GO-mf	core promoter sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
GO:0001228	GO-mf	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	EnsemblGenomes	N/A	IEA

Expression Patterns of Glyma.15g064500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g064500

Paralog	Evidence	Comments
Glyma.13g249800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g064500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g07010	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g064500

Limit To All Plant Sequences

>Glyma.15g064500.2 sequence-type=transcript locus=Glyma.15g064500 ID=Glyma.15g064500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTATTTCATTTGTCAAATCATCCACTTGTAATGTCAACCGCGTTCTGGTAAATCCCCCTAGCCGTACCCTTTCCAACCGTTCCATATATAAAATGTCTCAAACCCCCTAACTTTCTTACATCCCCAATAAACTTATAAGTGCGGAACTGTGTTAGAAGAAGAAGAGCTCAAAGATACTAACAAATCAGCAAATTCAGAAGGAAACACAGATTCTGCAGATAAAACATATAGCTAGCATCAATAAGTCTTGCTTGCCATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTATTAATCCAACAAGAAGTGTGTTTCCTCTTATGCCATCAACTTGTTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTGGATTTGAAGGGAACAAGGTCTTGTGCTGAGGAGACTGATATTAACTTGGTTTCTTCTGATACTTCTCTGAGTTTTCTTGATGCCGAGAAGCCACACCAGAGCGGAACTGGTAGCATCTTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCACCGAATTGGAGTCAATCTTTATTAGGGAGCAGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGTGGTTCTTCCAATGATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGATGGTGGCAGCGAGCAAGTTTCCACCGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGATGGATCATTATCTGGTGGTAATTTCCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCATCAACCACAACCACAGAATTCACTTTTCACCAACCCCTCCATGTCCTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTCTCTTCCTTTCTCAAACCCTCAATGCCAAAGCAACAGCTCCGTGGATTGCACTTTTCCAACAACACTACTCCTTTCTGGAATTCTTCAGCCGAAGCGCTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGGCCCAATATCAAACTCCAAAATTTGAAGAGAAACCCAACTGCCCCCATACTCTATTAAAGAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCCGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACGGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTATTGAGGACTCCATATATGAAAAACAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGCCAAAGCAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGGTTTCAAGCACATTCCCGGTCGCTAATGAGACCATTGTTGACTTCTGGACGCCTACATTTGGAGGCGCACTCATTGGCAAGTAGAGACAAGTGGAGAACTCGTGACCataataactatatatttatatatatatGTGTAAACTAAAAGGAAGAAGAAGAAGAAGGCACGATTGGCAAAGAGAAAATTAAATTAAAGCTGaagagaacaaaagagaaaaaaagaaagaaagaaaaggaagaGACTCTTCAAAGAGAACACGTAAAGCAGAATGATGTACGCTAGTAAATGATTAGTGACTTCTTGAAGAGAATATAATAGATTAGCTTTAGGACCCTTTAAGATTAATAGTGTTTTAAATATTAACGTCGATGAGTGGCAGGAACAAGTGCTAAATTCAGAGGCATTTGACATATTAGATTATAGACTTTTTGTTGCTGTTGTTGTTAGAGAGTCAGTAATATATGCCTGAATTTAGCAGATGGGGTAGCTAGCTAAAACGCCTTTTGTTCCTGCTATAATCGATGTATTATTGTATTATATATTTTGAATCATTAAAGAGGTTTTACACCAACTTTAATTTTATTATTTATATGAAAATAAAAAAATAAACAAAATAAAGCGGATTATATTGTACCGTTC

Coding sequences of Glyma.15g064500

Limit To All Plant Sequences

>Glyma.15g064500.1 sequence-type=CDS polypeptide=Glyma.15g064500.1.p locus=Glyma.15g064500 ID=Glyma.15g064500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTATTAATCCAACAAGAAGTGTGTTTCCTCTTATGCCATCAACTTGTTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTGGATTTGAAGGGAACAAGGTCTTGTGCTGAGGAGACTGATATTAACTTGGTTTCTTCTGATACTTCTCTGAGTTTTCTTGATGCCGAGAAGCCACACCAGAGCGGAACTGGTAGCATCTTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCACCGAATTGGAGTCAATCTTTATTAGGGAGCAGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGTGGTTCTTCCAATGATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGATGGTGGCAGCGAGCAAGTTTCCACCGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGATGGATCATTATCTGGTGGTAATTTCCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCATCAACCACAACCACAGAATTCACTTTTCACCAACCCCTCCATGTCCTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTCTCTTCCTTTCTCAAACCCTCAATGCCAAAGCAACAGCTCCGTGGATTGCACTTTTCCAACAACACTACTCCTTTCTGGAATTCTTCAGCCGAAGCGCTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGGCCCAATATCAAACTCCAAAATTTGAAGAGAAACCCAACTGCCCCCATACTCTATTAAAGAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCCGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACGGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTATTGAGGACTCCATATATGAAAAACAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGCCAAAGCAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGGTTTCAAGCACATTCCCGGTCGCTAATGAGACCATTGTTGACTTCTGGACGCCTACATTTGGAGGCGCACTCATTGGCAAGTAG

>Glyma.15g064500.2 sequence-type=CDS polypeptide=Glyma.15g064500.2.p locus=Glyma.15g064500 ID=Glyma.15g064500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTATTAATCCAACAAGAAGTGTGTTTCCTCTTATGCCATCAACTTGTTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTGGATTTGAAGGGAACAAGGTCTTGTGCTGAGGAGACTGATATTAACTTGGTTTCTTCTGATACTTCTCTGAGTTTTCTTGATGCCGAGAAGCCACACCAGAGCGGAACTGGTAGCATCTTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCACCGAATTGGAGTCAATCTTTATTAGGGAGCAGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGTGGTTCTTCCAATGATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGATGGTGGCAGCGAGCAAGTTTCCACCGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGATGGATCATTATCTGGTGGTAATTTCCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCATCAACCACAACCACAGAATTCACTTTTCACCAACCCCTCCATGTCCTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTCTCTTCCTTTCTCAAACCCTCAATGCCAAAGCAACAGCTCCGTGGATTGCACTTTTCCAACAACACTACTCCTTTCTGGAATTCTTCAGCCGAAGCGCTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGGCCCAATATCAAACTCCAAAATTTGAAGAGAAACCCAACTGCCCCCATACTCTATTAAAGAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCCGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACGGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTATTGAGGACTCCATATATGAAAAACAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGCCAAAGCAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGGTTTCAAGCACATTCCCGGTCGCTAATGAGACCATTGTTGACTTCTGGACGCCTACATTTGGAGGCGCACTCATTGGCAAGTAG

Predicted protein sequences of Glyma.15g064500

Limit To All Plant Sequences

>Glyma.15g064500.1.p sequence-type=predicted peptide transcript=Glyma.15g064500.1 locus=Glyma.15g064500 ID=Glyma.15g064500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEEFQAAICGESWWNIINPTRSVFPLMPSTCSVAAADAGNYSTWQSTTDFVDLKGTRSCAEETDINLVSSDTSLSFLDAEKPHQSGTGSILIDSTLQMMGFGMSSSTSPNWSQSLLGSSFDSVLQEETGIGGGGSSNDSQIQKDWSPKNFSSDGGSEQVSTVDAFKPMNQEFSLDQQSLNSVVTSTDGSLSGGNFPVVSASYGYPSTLIQSLYEHQPQPQNSLFTNPSMSYGTCSNELSPTWSKVSSFLKPSMPKQQLRGLHFSNNTTPFWNSSAEALNDIRAGVFASSQAQYQTPKFEEKPNCPHTLLKKLKREESPDAAKKNSPEPAAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLRTPYMKNNGAPIQHQQDCDNLKDSEGPKQDLRSRGLCLVPVSSTFPVANETIVDFWTPTFGGALIGK*

>Glyma.15g064500.2.p sequence-type=predicted peptide transcript=Glyma.15g064500.2 locus=Glyma.15g064500 ID=Glyma.15g064500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEEFQAAICGESWWNIINPTRSVFPLMPSTCSVAAADAGNYSTWQSTTDFVDLKGTRSCAEETDINLVSSDTSLSFLDAEKPHQSGTGSILIDSTLQMMGFGMSSSTSPNWSQSLLGSSFDSVLQEETGIGGGGSSNDSQIQKDWSPKNFSSDGGSEQVSTVDAFKPMNQEFSLDQQSLNSVVTSTDGSLSGGNFPVVSASYGYPSTLIQSLYEHQPQPQNSLFTNPSMSYGTCSNELSPTWSKVSSFLKPSMPKQQLRGLHFSNNTTPFWNSSAEALNDIRAGVFASSQAQYQTPKFEEKPNCPHTLLKKLKREESPDAAKKNSPEPAAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLRTPYMKNNGAPIQHQQDCDNLKDSEGPKQDLRSRGLCLVPVSSTFPVANETIVDFWTPTFGGALIGK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain