Glyma.15g061100

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Report for Sequence Feature Glyma.15g061100

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4711531
stop:	4715000
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g061100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21860.1	AT	methionine sulfoxide reductase B 2	JGI	N/A	IEA
AT4G21860.2	AT	methionine sulfoxide reductase B 2	JGI	N/A	IEA
GO:0006979	GO-bp	response to oxidative stress	EnsemblGenomes	N/A	IEA
GO:0030091	GO-bp	protein repair	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0016671	GO-mf	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	EnsemblGenomes	N/A	IEA
GO:0033743	GO-mf	peptide-methionine (R)-S-oxide reductase activity	EnsemblGenomes	N/A	IEA
GO:0033743	GO-mf	peptide-methionine (R)-S-oxide reductase activity	JGI	N/A	IEA
KOG0856	KOG	Predicted pilin-like transcription factor	JGI	N/A	IEA
PTHR10173	Panther	METHIONINE SULFOXIDE REDUCTASE	JGI	N/A	IEA
PTHR10173:SF0	Panther		JGI	N/A	IEA
PF01641	PFAM	SelR domain	JGI	N/A	IEA

Expression Patterns of Glyma.15g061100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g061100

Paralog	Evidence	Comments
Glyma.13g253800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g061100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g06650	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g061100

Limit To All Plant Sequences

>Glyma.15g061100.2 sequence-type=transcript locus=Glyma.15g061100 ID=Glyma.15g061100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATAATGTAAAAGGTGAGGGTGACCCGTGATTCGTGAACACAAACACCATCGCCATGGGCTTCAATATTCTGAGAACCACTTCCATCTCCACTCCTATCTCTTCCTCCAAATCCAAACCCATTTTCTCAACTCTTCTTCGTTCTTCTCCTTCCACCATTTTCCCCCCAAAGTCCGTTACTCCCACCACTCTTTTCGTTTCTGCCACCCCCTTCTTCACTCTCCATCCCAAGCTTGGTTTTCGTGGTGGGATTGTGGCCATGGCCGCACCTGGCTCTCTCCGCAAATCCGAGGAAGAGTGGCGCGCAATTCTCTCCCCTGAACAGTTTCGGATCCTCAGGCAAAAGGGCACCGAGTTCCCTGGAACAGGAGAGTATGACAAGTTCTATGAAGAGGGAGTTTACAACTGTGCTGGTTGTGGGACTCCACTCTACAGGTCCATAACAAAATTCAATTCTGGTTGTGGCTGGCCAGCCTTCTATGAGGGGATTCCCGGAGCCATAAATCGCAATTGTCATGTACCAACAGCCGGATCCTGATGGGATGAGGACAGAAATAACGTGTGCTGCTTGTGGGGGACATCTAGGTCACGTCTTTAAAGGAGAAGGATTTCCAACACCCACTAACGAACGCCATTGTGTCAATAGCATTTCGCTGAAATTTGCGCCAGCCAATTCTTATTCTTAATAAAATTGAGTCTGCAGTTTGGACGTGACTACTTAAGTACCCAACATCGGTAAAAAAATTATGCAATGTACTTATATTATGAATGAAGTTAAAAAAAAAATGATGGCTAAATAACAATGTTGATAATTTGTACCTTTATTCCTCTGTTCCCTTTTTCACTTGGTGCTAGATCTACTATGTTCATTTGTGCTTGTGTTCGTACTTGGGTTTATATATGTGATATGTCCAAGTAGATTAAAGGTGATAATGATATTGTGAATACTGAATACGCTCATGAAAATGGAAGT

Coding sequences of Glyma.15g061100

Limit To All Plant Sequences

>Glyma.15g061100.1 sequence-type=CDS polypeptide=Glyma.15g061100.1.p locus=Glyma.15g061100 ID=Glyma.15g061100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCTTCAATATTCTGAGAACCACTTCCATCTCCACTCCTATCTCTTCCTCCAAATCCAAACCCATTTTCTCAACTCTTCTTCGTTCTTCTCCTTCCACCATTTTCCCCCCAAAGTCCGTTACTCCCACCACTCTTTTCGTTTCTGCCACCCCCTTCTTCACTCTCCATCCCAAGCTTGGTTTTCGTGGTGGGATTGTGGCCATGGCCGCACCTGGCTCTCTCCGCAAATCCGAGGAAGAGTGGCGCGCAATTCTCTCCCCTGAACAGTTTCGGATCCTCAGGCAAAAGGGCACCGAGTTCCCTGGAACAGGAGAGTATGACAAGTTCTATGAAGAGGGAGTTTACAACTGTGCTGGTTGTGGGACTCCACTCTACAGGTCCATAACAAAATTCAATTCTGGTTGTGGCTGGCCAGCCTTCTATGAGGGGATTCCCGGAGCCATAAATCGCAATCCGGATCCTGATGGGATGAGGACAGAAATAACGTGTGCTGCTTGTGGGGGACATCTAGGTCACGTCTTTAAAGGAGAAGGATTTCCAACACCCACTAACGAACGCCATTGTGTCAATAGCATTTCGCTGAAATTTGCGCCAGCCAATTCTTATTCTTAA

>Glyma.15g061100.2 sequence-type=CDS polypeptide=Glyma.15g061100.2.p locus=Glyma.15g061100 ID=Glyma.15g061100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCTTCAATATTCTGAGAACCACTTCCATCTCCACTCCTATCTCTTCCTCCAAATCCAAACCCATTTTCTCAACTCTTCTTCGTTCTTCTCCTTCCACCATTTTCCCCCCAAAGTCCGTTACTCCCACCACTCTTTTCGTTTCTGCCACCCCCTTCTTCACTCTCCATCCCAAGCTTGGTTTTCGTGGTGGGATTGTGGCCATGGCCGCACCTGGCTCTCTCCGCAAATCCGAGGAAGAGTGGCGCGCAATTCTCTCCCCTGAACAGTTTCGGATCCTCAGGCAAAAGGGCACCGAGTTCCCTGGAACAGGAGAGTATGACAAGTTCTATGAAGAGGGAGTTTACAACTGTGCTGGTTGTGGGACTCCACTCTACAGGTCCATAACAAAATTCAATTCTGGTTGTGGCTGGCCAGCCTTCTATGAGGGGATTCCCGGAGCCATAAATCGCAATTGTCATGTACCAACAGCCGGATCCTGA

Predicted protein sequences of Glyma.15g061100

Limit To All Plant Sequences

>Glyma.15g061100.1.p sequence-type=predicted peptide transcript=Glyma.15g061100.1 locus=Glyma.15g061100 ID=Glyma.15g061100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFNILRTTSISTPISSSKSKPIFSTLLRSSPSTIFPPKSVTPTTLFVSATPFFTLHPKLGFRGGIVAMAAPGSLRKSEEEWRAILSPEQFRILRQKGTEFPGTGEYDKFYEEGVYNCAGCGTPLYRSITKFNSGCGWPAFYEGIPGAINRNPDPDGMRTEITCAACGGHLGHVFKGEGFPTPTNERHCVNSISLKFAPANSYS*

>Glyma.15g061100.2.p sequence-type=predicted peptide transcript=Glyma.15g061100.2 locus=Glyma.15g061100 ID=Glyma.15g061100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFNILRTTSISTPISSSKSKPIFSTLLRSSPSTIFPPKSVTPTTLFVSATPFFTLHPKLGFRGGIVAMAAPGSLRKSEEEWRAILSPEQFRILRQKGTEFPGTGEYDKFYEEGVYNCAGCGTPLYRSITKFNSGCGWPAFYEGIPGAINRNCHVPTAGS*

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