Report for Sequence Feature Glyma.15g056200
Feature Type: gene_model
Chromosome: Gm15
Start: 4382605
stop: 4386505
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.15g056200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G51220.1 AT
ubiquinol-cytochrome C chaperone family protein
JGI N/A IEA
GO:0034551 GO-bp
mitochondrial respiratory chain complex III assembly
EnsemblGenomes N/A IEA
GO:0070131 GO-bp
positive regulation of mitochondrial translation
EnsemblGenomes N/A IEA
GO:0005739 GO-cc
mitochondrion
EnsemblGenomes N/A IEA
KOG2873
KOG
Ubiquinol cytochrome c reductase assembly protein CBP3
JGI N/A IEA
PTHR12184 Panther
BASIC FGF-REPRESSED ZIC BINDING PROTEIN HOMOLOG (ZIC3-BINDING PROTEIN)
JGI N/A IEA
PF03981 PFAM
Ubiquinol-cytochrome C chaperone
JGI N/A IEA
Expression Patterns of Glyma.15g056200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.15g056200
Paralog Evidence Comments
Glyma.08g176800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.15g056200 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma15g06170 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.15g056200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.15g056200.2 sequence-type=transcript locus=Glyma.15g056200 ID=Glyma.15g056200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGTCCACCTGGTCCATTAAAGTTTGGTTTCTCTTCGCCGCTGGCGTTGGTCCGTGTTGAGACTTGAGAAATGTTGCGAAGATGGAGCAAAGCAGTTACTCCAATCTCCAAATTTGGATCGCAGAGTCATTTGAATTTCGTGAAGGACGTCTCGCGCCAAACCTACGCCGGGGTTGCACCCGCGCCAACGATAGAGGACAAACCTCACCGCCCCGTGGTTAACCTAGATAAAATGTTTTGGTCTAAACCCTGTTCGCTGGCCTTGCCCCGTGACTCACCCCTCAGAGTTGAAGAACCTGATTATCAGGGCATCAAGCGTTTAATGCTCAAACTCATGCTGTTTTATAGTAAGCAGAGCAAGTCAATTCGTGGGGCTAATGTTGTGTACCAAAGAATCATTTCTCAAGTTGATAAACCTCCCATTTATGAAGTGTTTAACTTGGAGAAAACATTCAAAACAACATTCTCTTTACTTGTGCTTCATATGTGGTTCTGTTTGCGTCGCTTGAAGCAAGAGGGAAAGGAGGGTGTTGAATTTGGCCAGTACCTTTATGAGATTTACAATCACGATGTGGAGCTAAGAGTGTCCAAAGCTGGAGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTATGGGAACATTGTTGCTTATGATACTGCCATACTTCTGGAAGCTAAACCGGGTGATTTTTCTAATGTTATATGGAGGAATATATTCTCTGAAGATGGTTCTTCAACACCAGATGCTGCTGCATCTCAATCAGTGCAGGCGATGGCCAGATATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAGATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATGAGAACACAAACGGAAAGGGGCCTCAATGATAAAGTGGCGATTTCTAAATTTGTGATTTAGTGAATTGAAAATACACGCTGTTCttattttattttattttatttatttatttatAAAAAAATGTTGAATAATTATGACAAAAAGCTCATGTCCTTCTCTGTAAGGCTTTATACATGATTAGCTTGGGGCCTAGAAACTAGAATTCTCATATTCTTGCCCTGTAAGACGAGAATAGAAAAAGGGCAGAAGTGATTGAAAAGTGTTGTTCTTTCTTATTTTTGGCCTTATGTTCATCTTTACTGCGCTTTAACGGCTTCAATTGTTTGCCTGTGTTATGCGAGACATTACAATACAATACAAA
Coding sequences of Glyma.15g056200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.15g056200.1 sequence-type=CDS polypeptide=Glyma.15g056200.1.p locus=Glyma.15g056200 ID=Glyma.15g056200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGCGAAGATGGAGCAAAGCAGTTACTCCAATCTCCAAATTTGGATCGCAGAGTCATTTGAATTTCGTGAAGGACGTCTCGCGCCAAACCTACGCCGGGGTTGCACCCGCGCCAACGATAGAGGACAAACCTCACCGCCCCGTGGTTAACCTAGATAAAATGTTTTGGTCTAAACCCTGTTCGCTGGCCTTGCCCCGTGACTCACCCCTCAGAGTTGAAGAACCTGATTATCAGGGCATCAAGCGTTTAATGCTCAAACTCATGCTGTTTTATAGTAAGCAGAGCAAGTCAATTCGTGGGGCTAATGTTGTGTACCAAAGAATCATTTCTCAAGTTGATAAACCTCCCATTTATGAAGTGTTTAACTTGGAGAAAACATTCAAAACAACATTCTCTTTACTTGTGCTTCATATGTGGTTCTGTTTGCGTCGCTTGAAGCAAGAGGGAAAGGAGGGTGTTGAATTTGGCCAGTACCTTTATGAGATTTACAATCACGATGTGGAGCTAAGAGTGTCCAAAGCTGGAGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTATGGGAACATTGTTGCTTATGATACTGCCATACTTCTGGAAGCTAAACCGGGTGATTTTTCTAATGTTATATGGAGGAATATATTCTCTGAAGATGGTTCTTCAACACCAGATGCTGCTGCATCTCAATCAGTGCAGGCGATGGCCAGATATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAGATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATGAGAACACAAACGGAAAGGGGCCTCAATGA
>Glyma.15g056200.2 sequence-type=CDS polypeptide=Glyma.15g056200.2.p locus=Glyma.15g056200 ID=Glyma.15g056200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGCGAAGATGGAGCAAAGCAGTTACTCCAATCTCCAAATTTGGATCGCAGAGTCATTTGAATTTCGTGAAGGACGTCTCGCGCCAAACCTACGCCGGGGTTGCACCCGCGCCAACGATAGAGGACAAACCTCACCGCCCCGTGGTTAACCTAGATAAAATGTTTTGGTCTAAACCCTGTTCGCTGGCCTTGCCCCGTGACTCACCCCTCAGAGTTGAAGAACCTGATTATCAGGGCATCAAGCGTTTAATGCTCAAACTCATGCTGTTTTATAGTAAGCAGAGCAAGTCAATTCGTGGGGCTAATGTTGTGTACCAAAGAATCATTTCTCAAGTTGATAAACCTCCCATTTATGAAGTGTTTAACTTGGAGAAAACATTCAAAACAACATTCTCTTTACTTGTGCTTCATATGTGGTTCTGTTTGCGTCGCTTGAAGCAAGAGGGAAAGGAGGGTGTTGAATTTGGCCAGTACCTTTATGAGATTTACAATCACGATGTGGAGCTAAGAGTGTCCAAAGCTGGAGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTATGGGAACATTGTTGCTTATGATACTGCCATACTTCTGGAAGCTAAACCGGGTGATTTTTCTAATGTTATATGGAGGAATATATTCTCTGAAGATGGTTCTTCAACACCAGATGCTGCTGCATCTCAATCAGTGCAGGCGATGGCCAGATATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAGATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATGAGAACACAAACGGAAAGGGGCCTCAATGA
Predicted protein sequences of Glyma.15g056200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.15g056200.1.p sequence-type=predicted peptide transcript=Glyma.15g056200.1 locus=Glyma.15g056200 ID=Glyma.15g056200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLRRWSKAVTPISKFGSQSHLNFVKDVSRQTYAGVAPAPTIEDKPHRPVVNLDKMFWSKPCSLALPRDSPLRVEEPDYQGIKRLMLKLMLFYSKQSKSIRGANVVYQRIISQVDKPPIYEVFNLEKTFKTTFSLLVLHMWFCLRRLKQEGKEGVEFGQYLYEIYNHDVELRVSKAGVNLLLTKWMKELEKIFYGNIVAYDTAILLEAKPGDFSNVIWRNIFSEDGSSTPDAAASQSVQAMARYARREVSCMTLTDKEALFSGNFMFTSLKHENTNGKGPQ*
>Glyma.15g056200.2.p sequence-type=predicted peptide transcript=Glyma.15g056200.2 locus=Glyma.15g056200 ID=Glyma.15g056200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLRRWSKAVTPISKFGSQSHLNFVKDVSRQTYAGVAPAPTIEDKPHRPVVNLDKMFWSKPCSLALPRDSPLRVEEPDYQGIKRLMLKLMLFYSKQSKSIRGANVVYQRIISQVDKPPIYEVFNLEKTFKTTFSLLVLHMWFCLRRLKQEGKEGVEFGQYLYEIYNHDVELRVSKAGVNLLLTKWMKELEKIFYGNIVAYDTAILLEAKPGDFSNVIWRNIFSEDGSSTPDAAASQSVQAMARYARREVSCMTLTDKEALFSGNFMFTSLKHENTNGKGPQ*