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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57150.1 | AT | homologue of NAP57 | JGI | N/A | IEA |
| GO:0000495 | GO-bp | box H/ACA snoRNA 3'-end processing | EnsemblGenomes | N/A | IEA |
| GO:0001522 | GO-bp | pseudouridine synthesis | EnsemblGenomes | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | JGI | N/A | IEA |
| GO:0009451 | GO-bp | RNA modification | EnsemblGenomes | N/A | IEA |
| GO:0031118 | GO-bp | rRNA pseudouridine synthesis | EnsemblGenomes | N/A | IEA |
| GO:0031120 | GO-bp | snRNA pseudouridine synthesis | EnsemblGenomes | N/A | IEA |
| GO:1990481 | GO-bp | mRNA pseudouridine synthesis | EnsemblGenomes | N/A | IEA |
| GO:0031429 | GO-cc | box H/ACA snoRNP complex | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | JGI | N/A | IEA |
| GO:0009982 | GO-mf | pseudouridine synthase activity | EnsemblGenomes | N/A | IEA |
| KOG2529 | KOG | Pseudouridine synthase | JGI | N/A | IEA |
| PTHR23127 | Panther | CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 | JGI | N/A | IEA |
| PF01472 | PFAM | PUA domain | JGI | N/A | IEA |
| PF01509 | PFAM | TruB family pseudouridylate synthase (N terminal domain) | JGI | N/A | IEA |
| PF08068 | PFAM | DKCLD (NUC011) domain | JGI | N/A | IEA |
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Glyma.15g056100 not represented in the dataset |
Glyma.15g056100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g176900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g06160 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g056100.1 sequence-type=CDS polypeptide=Glyma.15g056100.1.p locus=Glyma.15g056100 ID=Glyma.15g056100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCACTCCGACAGCAGCAAGAAGAAGAAGCAGCAGCAGCGTAGCAAGCACGAAGGAGGAGGAGGAGAGGAAGAATCGAAAGACGAAGGCGGGTTGATGATCAAGCCGCAGAGCTTCACTCCCCCAATCGACACCTCCCAATGGCCCATCCTCCTCAAAAACTATGAGCGTCTCAATGTCCGCACCGGCCACTACACCCCCATCCCCTCCGGCTACTCCCCCTTGAAGCGCCCCCTCGCCGAGTACCTCAAATACGGCGTCCTCAACCTCGACAAGCCCGCCAACCCTTCCTCCCACGAGGTCGTCGCCTGGATCAAGCGCCTCCTCCGCGTCGAAAAGACCGGCCACTCCGGCACCCTCGACCCCAAGGTCACCGGCAACCTCATCGTCTGCATCGACCGCGCCACTCGCCTCGTCAAGTCCCAGCAGGGCGCCGGCAAGGAGTACGTCTGCATCGCCCGCCTCCACTCCGACGTCCCCGACGTCTCCAAGGTCGCCCGCGCCCTCGAAACCCTCACCGGCGCCGTCTTCCAGCGTCCCCCCTTGATTTCCGCCGTCAAGCGCCAGCTCCGGATTCGGACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTGGTTGTTTTCTGGATTTCCTGTGAGGCTGGCACCTATGTTAGGACTATGTGTGTGCACTTAGGCTTGCTTCTTGGTGTGGGTAGCCACATGCAGGAGCTTAGGAGGGTCAGGTCTGGGATCATGGGGGAGAAGGATAACATGGTCTCCATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGACTTATTTGAGGAGGGTTGTTATGCCCTTGGAGATTCTTCTGACTAGCTATAAGAGGCTTGTTGTCAAGGATTCTGCTGTCAATGCTATTTGTTATGGTGCTAAGTTCATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTTATGACTACCAAGGGTGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGGTTGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACTTATCCCAGGAAGTGGGGCTTGGGCCCGAGGGCGTCCATGAAGAAGAGGCTTATTAGTGAAGGGAAGCTCGATAAGCATGGGAAGCCCAATGAGAAGACCCCCCAGGAGTGGCTTAGGAATTTGGTTTTGCCAACTGGTGGGGATAGTGTGATTGCTGGCTTGGCTGCTGCGCCGGAACCTGAGGATGACAAGATTCAGAAGAAGGAGGGAGATGGGGAAGGGAAGAAGAGAAAGAAGCATGAAAGCACAGATAGCCCCGTTGCTGTTCCTGCTAAGAAGGTGAAAGTGGATGAAGTGGAAGAGGTTGAAAAGCAAGAAAAGGTGAAGGTGAAGAAGGTAGATGAAGAGACTGTGGAGGTTGAAGTTGAGAAGAAGGAGAAGAAGAAGAAAAAGAAGAAGAATAAGGAGAACAGCGAAGCAGCCTCTTCTGATGAGGAGAAAACTGAGAAGAAGAAGAAGAAGCACAAGGATAAGGTTGAAGATAGTTCGCCAGAGTTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGAAGCTGCTGCTGCTACTGCTGAAATTAGCAATGGAAAGGAGGATGACAGTAATGCTGATAAGAGTGAAAAGAAGAAGCACAAGAAAAAGAAAAACAAAGATGCTGACGAAGAATAG
>Glyma.15g056100.1.p sequence-type=predicted peptide transcript=Glyma.15g056100.1 locus=Glyma.15g056100 ID=Glyma.15g056100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSHSDSSKKKKQQQRSKHEGGGGEEESKDEGGLMIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEPEDDKIQKKEGDGEGKKRKKHESTDSPVAVPAKKVKVDEVEEVEKQEKVKVKKVDEETVEVEVEKKEKKKKKKKNKENSEAASSDEEKTEKKKKKHKDKVEDSSPELDKSEKKKKKKKDKEAAAATAEISNGKEDDSNADKSEKKKHKKKKNKDADEE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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