Glyma.15g054900

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.15g054900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.15g054900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.15g054900

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4308458
stop:	4313071
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g054900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25480.1	AT	DNA methyltransferase-2	JGI	N/A	IEA
GO:0006306	GO-bp	DNA methylation	JGI	N/A	IEA
GO:0032259	GO-bp	methylation	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0008168	GO-mf	methyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0008168	GO-mf	methyltransferase activity	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
KOG0919	KOG	C-5 cytosine-specific DNA methylase	JGI	N/A	IEA
PTHR10629	Panther	CYTOSINE-SPECIFIC METHYLTRANSFERASE	JGI	N/A	IEA
PTHR10629:SF8	Panther	TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE	JGI	N/A	IEA
PF00145	PFAM	C-5 cytosine-specific DNA methylase	JGI	N/A	IEA

Expression Patterns of Glyma.15g054900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g054900 not represented in the dataset	Glyma.15g054900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g054900

Paralog	Evidence	Comments
Glyma.08g177800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g054900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g06040	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.15g054900

Limit To All Plant Sequences

>Glyma.15g054900.1 sequence-type=CDS polypeptide=Glyma.15g054900.1.p locus=Glyma.15g054900 ID=Glyma.15g054900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAGGAGTCATCGGAGTCACGCGGCTGCTGGAGAGTGTTGGAGTTTTACAGTGGAATCGGTGGCATGAGGTACTCACTGATGAAGGCCCAGGTGAACGCTCAAGTGGTGCAAGCATTTGAAATTAATGACACAGCAAATGATGTTTACCAACATAATTTTGGTCATCGTCCTTATCAGGGAAATATTCAATGTCTGACTGCTGCTGATCTGGACAAGTATGGTGCCGATGCATGGCTTCTTTCTCCTCCTTGCCAACCTTATACACGACAAGGTCTCCAGAAGGACACTGGTGATGCTCGGGCATTTTCTTTTCTTCAGATTCTTGAGCTCATGCCATTTTTATTGCGGCCTCCGAGTATGTTATTTGTGGAAAATGTTGTTGGATTTGAGACATCTGATACGCATGCAAAACTAATTGAAATATTGGAAAAAACAAATTTTATCACACAGGAGTTCATTCTGACCCCTTTACAGTTTGGAATCCCATATTCCAGGCCTCGTTATTTTTGTCTGGCCAAGAGAAAACTTTCATCTTTTGTTAATGAGTGTCTGAACAGCCAGCTGATTCAATCTCCACCGCCATTATTTGAGCATTTTGACACAGCGGCTGATGAAGACGATTCATCAAAAGAGGACAGGCAAAACTTGTTGCAGTCATGTCAGCCTATTGAGAATTTTCTTGAATTGAAGAACCCTAGCAGTGATATAGCTGTTGAATCTGTAGCTTTAAGGACTGATTTATCTAATGACGCTCCTAGAACTTTGGGGAAAAATAATGGTCATGATGAATATGAATCTTTGGACCAGTATTTCGTTCACCCAAGCTTGATAGAACGGTGGGGAAGTGCTATGGATGTTGTCTACCCTGATTCAAAGCGCTGCTGCTGTTTTACAAAAAGTTATTACAGATATGTGAAGGGAACTGGTTCCCTTTTGGCAACTGTCCAGCCAGTGAAGAGGGACAAAACATCACTGAAGGAGCAATGCCTTAGATATTTTACCCCAAGAGAGGTTGCAAACCTACATTCTTTTCCTGAAGGATTTGTGTTTCCAGAGCACATTAGTCTCAGGCAACGGTATGCGTTACTAGGGAACAGTTTAAGCATAGCAGTTGTTGCTCCCTTACTTCAGTATCTTTTCACTCAACCTTAA

Predicted protein sequences of Glyma.15g054900

Limit To All Plant Sequences

>Glyma.15g054900.1.p sequence-type=predicted peptide transcript=Glyma.15g054900.1 locus=Glyma.15g054900 ID=Glyma.15g054900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKESSESRGCWRVLEFYSGIGGMRYSLMKAQVNAQVVQAFEINDTANDVYQHNFGHRPYQGNIQCLTAADLDKYGADAWLLSPPCQPYTRQGLQKDTGDARAFSFLQILELMPFLLRPPSMLFVENVVGFETSDTHAKLIEILEKTNFITQEFILTPLQFGIPYSRPRYFCLAKRKLSSFVNECLNSQLIQSPPPLFEHFDTAADEDDSSKEDRQNLLQSCQPIENFLELKNPSSDIAVESVALRTDLSNDAPRTLGKNNGHDEYESLDQYFVHPSLIERWGSAMDVVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPVKRDKTSLKEQCLRYFTPREVANLHSFPEGFVFPEHISLRQRYALLGNSLSIAVVAPLLQYLFTQP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain