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Report for Sequence Feature Glyma.15g054800

Feature Type:gene_model
Chromosome:Gm15
Start:4302422
stop:4307202
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g054800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G65260.1AT RNA-binding (RRM/RBD/RNP motifs) family protein JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG4209 KOG Splicing factor RNPS1, SR protein superfamily JGI N/AIEA
PTHR23365Panther POLY-A BINDING PROTEIN 2 JGI N/AIEA
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA

Expression Patterns of Glyma.15g054800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g054800
ParalogEvidenceComments
Glyma.08g177900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g054800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g06030 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g054800
>Glyma.15g054800.1 sequence-type=CDS polypeptide=Glyma.15g054800.1.p locus=Glyma.15g054800 ID=Glyma.15g054800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGCGCAAGATCCTGCAAATGCTTCTGCAAGTCAGGCCAATAAAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCCTATGTTGAGTTCCTTGAGGTGGAGGCTGTTCAGGAGGCCCTTTTGCTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTAACGGCTAAAAGGACCAACATACCAGGGATGAAACAGTATCGTCCCCGTCGGACCATCAATCCTTACATGGGGGGGTTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTACTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTGA
Predicted protein sequences of Glyma.15g054800
>Glyma.15g054800.1.p sequence-type=predicted peptide transcript=Glyma.15g054800.1 locus=Glyma.15g054800 ID=Glyma.15g054800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENDDVDMHAADTSEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSAQDPANASASQANKEEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRTINPYMGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY*






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