Report for Sequence Feature Glyma.15g054200
Feature Type: gene_model
Chromosome: Gm15
Start: 4257393
stop: 4262267
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.15g054200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G22310.2 AT
methyl-CPG-binding domain 8
JGI N/A IEA
GO:0005634 GO-cc
nucleus
EnsemblGenomes N/A IEA
GO:0003676 GO-mf
nucleic acid binding
EnsemblGenomes N/A IEA
GO:0003677 GO-mf
DNA binding
EnsemblGenomes N/A IEA
Expression Patterns of Glyma.15g054200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.15g054200
Paralog Evidence Comments
Glyma.08g178400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.15g054200 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma15g05970 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.15g054200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.15g054200.2 sequence-type=transcript locus=Glyma.15g054200 ID=Glyma.15g054200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAAGGAAGAGGCACAGAGAGCAGTGAAAGAGAGAAAGGAAGAAAAGAGGGAGGGAGAGAGGTTCGGGGGCCATGTAATTGGAAAAATGGAAGCATCATTGAAGTTGGAGTCCCTTGCGTGCATAGACTCCACCActctctctcactcagagctcctcgctctttctctctcctctctATGCTCCACCCATGATCTCCTCACTCCCAATATCGACCCCGCTCTCTTCAACCAGAGCACCGGCTCCCTCCGCCAGACCTACTCCCTCCCCCACTCCTCCCCTACCGCCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCTTCCCCCAAGCTCCCTCCCCTCCCCGCCCACGACCCCGAAAACGCCGAGAACCGCCTCATCATCGACTACCTCAAACAGTTCATCAGAGACGACCCCAATTTCGACCAAGTCGAACTCGCTCCCCCTTCCCTCCCCCAACCGAGAATCCAGAGGAAGCGTGGCAGAAATCCCAAAGTCAAAGTCCACTTGGATGACTGCTACCGCGGCATCGACATTGTTAACCAAAACGGCGTCTCTGTCGATCTCCAACTGTTGGCCAACTCCCAAGACCCCTTCGCCGAGGAACTCAAGAGACGCACCGAGGGTTTGCACAACGAAGAGGAGCTGTTAGGGTTTCTGAGGGACTTGCCGGGCCAGTGGGGGAGCCGGAGGAAGAAGCGCAGGATCGTCGACTCTGCGGATTTCGGCGACGTCTTGCCGCTTAGCTGGAAGATTCTCCTCGGTTTGAAGAGAAAGGATGGTCGCGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGGTAATGGTGATGCACAGTTGCAAATTAGTCGGAGGACTGAAAATGTAGTGCAAGAACACAAATTGTCTGCCGATAATTCTGCAGCTGTTACCAAGGAGCATCAAGATGAGATGCAGATTGTTGCTGTGAACATGGCTGTGTCTGGTTTGTCTGCTGCTAATGAGCGAGTGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTTGCGGATGTGCAGATTCATGACCTGTTGGAATGTCGCAAGTGCAACATGAGCTTCAATGAGAAGGATTTGTACTTGCAGCACCTGTTGTCCTTTCACCAGAGGACGACAAGGCGGTACCGGCTTGGTTCGTCTGTTGGAGATGGAGTTATAATTAAGGATGGCAAGTTTGAGTGCCAGTTCTGTCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTCACCGGGTCAGCCAAATGTCCAGGGGACAGACGACAAGTCTCCAGTCAGGGAGGACTTTCCCTTTAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAGAACTCTATTATGGAGGATACTGTCACTGAACCCCATAGTTCAGCTAAACTGAATAGGATTCCTGGTTCAGATGCTGTTGGTTACTTAGATCAAGATGGAAACTCTGAGTCTCCAGTCAGTGAACAGCAAATGGAAGATAGCATGACTGGAAAAAATGTGGATCATGATTTGGATGAAAAAGTAGAGGAAATTGACGATGATAACCATGCGATTGATGTAAAGATGGTTACTTTTCTGGATAACATGGGTTTGTTATCTGTAAATAACCAAGATGTTAATGCACCTGAGACTTCTTAGGTAAAAGATGATGTGCCATTGACTATTGAGGAACTGGATCAGTCTGGGATGGATTTGGATGACAATTCTCAAAACTGTTTACTTCCTTTATCTAAACATCACATAATACCAGAATCTGAAAAGAGTGAAAATTCTGTATGTGCTAATACTAAGGGTCAATTTATACTTGATGAAGGCATCAGTAACAAGAGTGAGTTGGAATTTAGTTTAAATGGCTTGAAGGATGTACCTGTTACTGTTAGCACTAATGTCCAAGAGATGGTAAGGCCAGCCTCTGAAGAAAATGTGGTACACTCTTGGGATTTTAACTCCTCTATATCCACAGAACAATCTTTGGGTTGTTTACCTGCATTCAACTCTGATGAGGGAGGAAAACAGTTTTGCAGTGTTGATCATGAACATGATAATGTCAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATATTGTTGAGTATGATTTTTTCCTGATGTACCAACTGAATTGAGAAATAACACAGTGGTGGAAGGGACGTATGCATCCCCAGTTCAGTTTGAATCACAAGAAGTTATGCTAAATATTGGTGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTGACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTCTAAGGCAAAAATCTCTGGTCAAGTCAATGTGTTGGACTGTGGATCCCCGAATGCTGGCTGTCTATAGACTGAGATTTTAGCTTTGGCAGCTGAATGATATTCCAAAGATAGTAAAAACAGATGATCTAGAAGAAAAAAGCCAGGATTTGGAGGTTGATGGAATACTCAATTATAGATTGTATCGTGTTATTTTTTATTAATTTCACCTCGTATGTTGTATTGTCGATTTGTCGTACATTGCCCCGTTCATTCGTATAGAAACCGATATTCAGTACTGTATTGTTTTCTTTTATCCACAACACTGCTGTAATAGTGTGCCTGGGGCTTTCATCTTGAACTAGGTACTAAACTAACGAGTGTATTCCCCAATTACACCAAATGAAATATGAACATCAGAACATATGTATACGCAATTTAGGCCCGTATATATATAGTGAGTATACTGTACTCTCTC
Coding sequences of Glyma.15g054200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.15g054200.1 sequence-type=CDS polypeptide=Glyma.15g054200.1.p locus=Glyma.15g054200 ID=Glyma.15g054200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCATCATTGAAGTTGGAGTCCCTTGCGTGCATAGACTCCACCACTCTCTCTCACTCAGAGCTCCTCGCTCTTTCTCTCTCCTCTCTATGCTCCACCCATGATCTCCTCACTCCCAATATCGACCCCGCTCTCTTCAACCAGAGCACCGGCTCCCTCCGCCAGACCTACTCCCTCCCCCACTCCTCCCCTACCGCCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCTTCCCCCAAGCTCCCTCCCCTCCCCGCCCACGACCCCGAAAACGCCGAGAACCGCCTCATCATCGACTACCTCAAACAGTTCATCAGAGACGACCCCAATTTCGACCAAGTCGAACTCGCTCCCCCTTCCCTCCCCCAACCGAGAATCCAGAGGAAGCGTGGCAGAAATCCCAAAGTCAAAGTCCACTTGGATGACTGCTACCGCGGCATCGACATTGTTAACCAAAACGGCGTCTCTGTCGATCTCCAACTGTTGGCCAACTCCCAAGACCCCTTCGCCGAGGAACTCAAGAGACGCACCGAGGGTTTGCACAACGAAGAGGAGCTGTTAGGGTTTCTGAGGGACTTGCCGGGCCAGTGGGGGAGCCGGAGGAAGAAGCGCAGGATCGTCGACTCTGCGGATTTCGGCGACGTCTTGCCGCTTAGCTGGAAGATTCTCCTCGGTTTGAAGAGAAAGGATGGTCGCGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGGTAATGGTGATGCACAGTTGCAAATTAGTCGGAGGACTGAAAATGTAGTGCAAGAACACAAATTGTCTGCCGATAATTCTGCAGCTGTTACCAAGGAGCATCAAGATGAGATGCAGATTGTTGCTGTGAACATGGCTGTGTCTGGTTTGTCTGCTGCTAATGAGCGAGTGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTTGCGGATGTGCAGATTCATGACCTGTTGGAATGTCGCAAGTGCAACATGAGCTTCAATGAGAAGGATTTGTACTTGCAGCACCTGTTGTCCTTTCACCAGAGGACGACAAGGCGGTACCGGCTTGGTTCGTCTGTTGGAGATGGAGTTATAATTAAGGATGGCAAGTTTGAGTGCCAGTTCTGTCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTCACCGGGTCAGCCAAATGTCCAGGGGACAGACGACAAGTCTCCAGTCAGGGAGGACTTTCCCTTTAAGGATATCTAA
>Glyma.15g054200.2 sequence-type=CDS polypeptide=Glyma.15g054200.2.p locus=Glyma.15g054200 ID=Glyma.15g054200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCATCATTGAAGTTGGAGTCCCTTGCGTGCATAGACTCCACCACTCTCTCTCACTCAGAGCTCCTCGCTCTTTCTCTCTCCTCTCTATGCTCCACCCATGATCTCCTCACTCCCAATATCGACCCCGCTCTCTTCAACCAGAGCACCGGCTCCCTCCGCCAGACCTACTCCCTCCCCCACTCCTCCCCTACCGCCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCTTCCCCCAAGCTCCCTCCCCTCCCCGCCCACGACCCCGAAAACGCCGAGAACCGCCTCATCATCGACTACCTCAAACAGTTCATCAGAGACGACCCCAATTTCGACCAAGTCGAACTCGCTCCCCCTTCCCTCCCCCAACCGAGAATCCAGAGGAAGCGTGGCAGAAATCCCAAAGTCAAAGTCCACTTGGATGACTGCTACCGCGGCATCGACATTGTTAACCAAAACGGCGTCTCTGTCGATCTCCAACTGTTGGCCAACTCCCAAGACCCCTTCGCCGAGGAACTCAAGAGACGCACCGAGGGTTTGCACAACGAAGAGGAGCTGTTAGGGTTTCTGAGGGACTTGCCGGGCCAGTGGGGGAGCCGGAGGAAGAAGCGCAGGATCGTCGACTCTGCGGATTTCGGCGACGTCTTGCCGCTTAGCTGGAAGATTCTCCTCGGTTTGAAGAGAAAGGATGGTCGCGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGGTAATGGTGATGCACAGTTGCAAATTAGTCGGAGGACTGAAAATGTAGTGCAAGAACACAAATTGTCTGCCGATAATTCTGCAGCTGTTACCAAGGAGCATCAAGATGAGATGCAGATTGTTGCTGTGAACATGGCTGTGTCTGGTTTGTCTGCTGCTAATGAGCGAGTGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTTGCGGATGTGCAGATTCATGACCTGTTGGAATGTCGCAAGTGCAACATGAGCTTCAATGAGAAGGATTTGTACTTGCAGCACCTGTTGTCCTTTCACCAGAGGACGACAAGGCGGTACCGGCTTGGTTCGTCTGTTGGAGATGGAGTTATAATTAAGGATGGCAAGTTTGAGTGCCAGTTCTGTCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTCACCGGGTCAGCCAAATGTCCAGGGGACAGACGACAAGTCTCCAGTCAGGGAGGACTTTCCCTTTAAGGATATCTAA
Predicted protein sequences of Glyma.15g054200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.15g054200.1.p sequence-type=predicted peptide transcript=Glyma.15g054200.1 locus=Glyma.15g054200 ID=Glyma.15g054200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEASLKLESLACIDSTTLSHSELLALSLSSLCSTHDLLTPNIDPALFNQSTGSLRQTYSLPHSSPTARRRRLAGLLPSPKLPPLPAHDPENAENRLIIDYLKQFIRDDPNFDQVELAPPSLPQPRIQRKRGRNPKVKVHLDDCYRGIDIVNQNGVSVDLQLLANSQDPFAEELKRRTEGLHNEEELLGFLRDLPGQWGSRRKKRRIVDSADFGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLGNGDAQLQISRRTENVVQEHKLSADNSAAVTKEHQDEMQIVAVNMAVSGLSAANERVKEVALLGIENLADVQIHDLLECRKCNMSFNEKDLYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDSPGQPNVQGTDDKSPVREDFPFKDI*
>Glyma.15g054200.2.p sequence-type=predicted peptide transcript=Glyma.15g054200.2 locus=Glyma.15g054200 ID=Glyma.15g054200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEASLKLESLACIDSTTLSHSELLALSLSSLCSTHDLLTPNIDPALFNQSTGSLRQTYSLPHSSPTARRRRLAGLLPSPKLPPLPAHDPENAENRLIIDYLKQFIRDDPNFDQVELAPPSLPQPRIQRKRGRNPKVKVHLDDCYRGIDIVNQNGVSVDLQLLANSQDPFAEELKRRTEGLHNEEELLGFLRDLPGQWGSRRKKRRIVDSADFGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLGNGDAQLQISRRTENVVQEHKLSADNSAAVTKEHQDEMQIVAVNMAVSGLSAANERVKEVALLGIENLADVQIHDLLECRKCNMSFNEKDLYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDSPGQPNVQGTDDKSPVREDFPFKDI*