Glyma.15g053500

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Report for Sequence Feature Glyma.15g053500

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4204776
stop:	4206970
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g053500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33520.3	AT	P-type ATP-ase 1	JGI	N/A	IEA
GO:0006874	GO-bp	cellular calcium ion homeostasis	EnsemblGenomes	N/A	IEA
GO:0030001	GO-bp	metal ion transport	EnsemblGenomes	N/A	IEA
GO:0030001	GO-bp	metal ion transport	JGI	N/A	IEA
GO:0070588	GO-bp	calcium ion transmembrane transport	EnsemblGenomes	N/A	IEA
GO:0099132	GO-bp	ATP hydrolysis coupled cation transmembrane transport	EnsemblGenomes	N/A	IEA
GO:0005887	GO-cc	integral component of plasma membrane	EnsemblGenomes	N/A	IEA
GO:0043231	GO-cc	intracellular membrane-bounded organelle	EnsemblGenomes	N/A	IEA
GO:0005388	GO-mf	calcium-transporting ATPase activity	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
PTHR24093	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24093:SF150	Panther		JGI	N/A	IEA
PF00403	PFAM	Heavy-metal-associated domain	JGI	N/A	IEA
PWY-6135	SoyCyc9	copper transport I	Plant Metabolic Network		ISS

Expression Patterns of Glyma.15g053500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g053500 not represented in the dataset	Glyma.15g053500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g053500

Paralog	Evidence	Comments
Glyma.08g179000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g053500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g05891	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g053500

Limit To All Plant Sequences

>Glyma.15g053500.2 sequence-type=transcript locus=Glyma.15g053500 ID=Glyma.15g053500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGCGATAACAAAATAGTTAAGCAGTAATTGGTCTCCCCTGGAGTTGCTCCGTGTCCGTGCTAATAATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGATCAAGAAGATAGCAGCTGAAGGAGTTCTATTTCATCATATAAATGCAAAAGAGTGGTTATCTGGAGTCCATGGTATGTCTTTTAACGGATTAAACTGTTATAAGATCTTATATACTCATAAGATCTTATTAAAAAGGAAACAAGAAATTAATATGATTTCTATTAATCAAAAGCAGTAGAATAATATTGTGAATAAATCTAATGCCTAATAATAGCATTG

Coding sequences of Glyma.15g053500

Limit To All Plant Sequences

>Glyma.15g053500.1 sequence-type=CDS polypeptide=Glyma.15g053500.1.p locus=Glyma.15g053500 ID=Glyma.15g053500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGTGGCAGATCAAGAAGATAGCAGCTGA

>Glyma.15g053500.2 sequence-type=CDS polypeptide=Glyma.15g053500.2.p locus=Glyma.15g053500 ID=Glyma.15g053500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTTTATCTTTCAATTCCGATCGCTGTGGATTCTTCGTCGTCTTTGACGGTGACGCAGATGGCGCTTTTCAAATCTCTGGAGCAGAAGCACCACCGTCATTTCGTAAGAGGCAGAGTCAGTGTTATTAGACCACTTCATCGCCGCCTCAACTCCGTTACGCCTCTGCGGTGCTCTTCCTCCGGCGACGACGCCACCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAATAGCGTCAAAAAAATTATAGAAAGCCGACCACAAGTGCTATCTGCTCATGTAAATTTGACATCCGAGACAGCAACCGTTTCCCCTGTGCCTGAACAAAAAACTGCACCAGATGGCCTAAAGCAATTGGGGGAGGAACTTGCGCAGCATTTAACTACATGTGGTTTTACTTCTACCCTTCGAGATCAAGAAGATAGCAGCTGA

Predicted protein sequences of Glyma.15g053500

Limit To All Plant Sequences

>Glyma.15g053500.1.p sequence-type=predicted peptide transcript=Glyma.15g053500.1 locus=Glyma.15g053500 ID=Glyma.15g053500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFYLSIPIAVDSSSSLTVTQMALFKSLEQKHHRHFVRGRVSVIRPLHRRLNSVTPLRCSSSGDDATITLHVGGMMCEGCANSVKKIIESRPQVLSAHVNLTSETATVSPVPEQKTAPDGLKQLGEELAQHLTTCGFTSTLRVADQEDSS*

>Glyma.15g053500.2.p sequence-type=predicted peptide transcript=Glyma.15g053500.2 locus=Glyma.15g053500 ID=Glyma.15g053500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFYLSIPIAVDSSSSLTVTQMALFKSLEQKHHRHFVRGRVSVIRPLHRRLNSVTPLRCSSSGDDATITLHVGGMMCEGCANSVKKIIESRPQVLSAHVNLTSETATVSPVPEQKTAPDGLKQLGEELAQHLTTCGFTSTLRDQEDSS*

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