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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22230.1 | AT | Thioesterase superfamily protein | JGI | N/A | IEA |
| AT5G10160.1 | AT | Thioesterase superfamily protein | JGI | N/A | IEA |
| GO:0006633 | GO-bp | fatty acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016836 | GO-mf | hydro-lyase activity | EnsemblGenomes | N/A | IEA |
| PF07977 | PFAM | FabA-like domain | JGI | N/A | IEA |
| FASYN-ELONG-PWY | SoyCyc9 | fatty acid elongation -- saturated | Plant Metabolic Network | ISS | |
| PWY-5156 | SoyCyc9 | superpathway of fatty acid biosynthesis II (plant) | Plant Metabolic Network | ISS | |
| PWY-5971 | SoyCyc9 | palmitate biosynthesis II (bacteria and plants) | Plant Metabolic Network | ISS | |
| PWY-5973 | SoyCyc9 | cis-vaccenate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5989 | SoyCyc9 | stearate biosynthesis II (bacteria and plants) | Plant Metabolic Network | ISS | |
| PWY-7388 | SoyCyc9 | octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | Plant Metabolic Network | ISS | |
| GN7V-50499 | SoyCyc9-rxn | fatty-acyl-CoA synthase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| FabZ | 3-hydroxyacyl-ACP dehydrase |
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Glyma.15g052500 not represented in the dataset |
Glyma.15g052500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g05800 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g052500.2 sequence-type=transcript locus=Glyma.15g052500 ID=Glyma.15g052500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AACAACAACTTGGGAGGCTCCGCCCTAACTGAAACTCAAAACGTAGCATTCCTTTCGAACTTGCACTTTGCAGCCTTTTTAACTTCAACTTCATTGTTTCTGTCGCCTTGCTTTGCTTTTAACGTTAACCTGCAATTGCATAAACTTTCAATAACTCAGTGCTCACACTTCAATTACAAGCTTTGGTTTTTCACTTCACGCTTGAAACCCAATGGCAGCCTCAGCTTTCTCCAACACATTGGTTTCTCCCATTTCTCTTTCATCCAAAGCCAAAGCCAAAGCCATTTCATTGCAACCCAAATTTCCACTTGTCAAATTCCCCAACCCCAGATCCCATCCCTTGTCGAGGAAAACGACGTCGCTCACCACGTTTTGTTCCTCCGATGCTGCCAATGCTCCTCAACATGACACCCCAATTGAATTAAGGTATCCCGCATTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCAATCATGCCTGGTGTTCTAATGGTCGAGGAAATGGTGGACGACGCCAAGGTGGAGGGCGTATCTATAGGTGGTGGAGGAGCCACTTCGTGAGGCAGAGATAGGGGGGTGTGAGATTTGGAGAAATGGGAGTGGACAAGGGTTGGTGGGTACAAGAGGGGAATGGTGGTGGTACGTGGTGAAGGGGCTGTCAGAGGAGGTAGAGGAGCCTTCAAAGATGGAGGGTAAAGTTTTTATGTGGAGGGTGTTTAATAAGATTGTGTACCTATAATTTAATCTAACTGCTCTTAATAATGGTGGTCCACCTTAGAATCTATCTAATATCTTATCATAAATTAAAAATGCACTAAAACAATGAATTAGTCTATCATAGGATAATAAAAAA
>Glyma.15g052500.1 sequence-type=CDS polypeptide=Glyma.15g052500.1.p locus=Glyma.15g052500 ID=Glyma.15g052500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGCCTCAGCTTTCTCCAACACATTGGTTTCTCCCATTTCTCTTTCATCCAAAGCCAAAGCCAAAGCCATTTCATTGCAACCCAAATTTCCACTTGTCAAATTCCCCAACCCCAGATCCCATCCCTTGTCGAGGAAAACGACGTCGCTCACCACGTTTTGTTCCTCCGATGCTGCCAATGCTCCTCAACATGACACCCCAATTGAATTAAGGTATCCCGCATTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCAATCATGCCTGGTGTTCTAATGGTCGAGGCAATGGCACAAGTTGGTGGTTTGGTCATGTTGCAACCTGAAGTGGGAGGTTCTCGTGAAAACTTCTTCTTTGCTGGAATAGACAAAGTGCGGTTTCGTAAGCCTGTGATAGCTGGGGACACCTTAGTTATGAGAATGACACTTACTAAGCTGCAAAAGCGATTTGGAATAGCAAAGATGGAAGGGAAGGCATATGTTGGAGGTGAAGTTGTGTGTGAGGGTGAATTTTTGATGGCAATGGGGAGTGAATAA >Glyma.15g052500.2 sequence-type=CDS polypeptide=Glyma.15g052500.2.p locus=Glyma.15g052500 ID=Glyma.15g052500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGCCTCAGCTTTCTCCAACACATTGGTTTCTCCCATTTCTCTTTCATCCAAAGCCAAAGCCAAAGCCATTTCATTGCAACCCAAATTTCCACTTGTCAAATTCCCCAACCCCAGATCCCATCCCTTGTCGAGGAAAACGACGTCGCTCACCACGTTTTGTTCCTCCGATGCTGCCAATGCTCCTCAACATGACACCCCAATTGAATTAAGGTATCCCGCATTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCAATCATGCCTGGTGTTCTAATGGTCGAGGAAATGGTGGACGACGCCAAGGTGGAGGGCGTATCTATAGGTGGTGGAGGAGCCACTTCGTGA
>Glyma.15g052500.1.p sequence-type=predicted peptide transcript=Glyma.15g052500.1 locus=Glyma.15g052500 ID=Glyma.15g052500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASAFSNTLVSPISLSSKAKAKAISLQPKFPLVKFPNPRSHPLSRKTTSLTTFCSSDAANAPQHDTPIELRYPAFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLTKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAMGSE* >Glyma.15g052500.2.p sequence-type=predicted peptide transcript=Glyma.15g052500.2 locus=Glyma.15g052500 ID=Glyma.15g052500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASAFSNTLVSPISLSSKAKAKAISLQPKFPLVKFPNPRSHPLSRKTTSLTTFCSSDAANAPQHDTPIELRYPAFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEEMVDDAKVEGVSIGGGGATS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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