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Report for Sequence Feature Glyma.15g048400

Feature Type:gene_model
Chromosome:Gm15
Start:3822413
stop:3826590
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g048400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23570.1AT XS domain-containing protein / XS zinc finger domain-containing protein-related JGI N/AIEA
GO:0031047GO-bp gene silencing by RNA EnsemblGenomesN/AIEA
GO:0031047GO-bp gene silencing by RNA JGI N/AIEA
GO:0005655GO-cc nucleolar ribonuclease P complex EnsemblGenomesN/AIEA
PTHR21596Panther RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED JGI N/AIEA
PTHR21596:SF1Panther JGI N/AIEA
PF03468PFAM XS domain JGI N/AIEA
PF03470PFAM XS zinc finger domain JGI N/AIEA

Expression Patterns of Glyma.15g048400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g048400
ParalogEvidenceComments
Glyma.08g184600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g048400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g05380 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g048400
>Glyma.15g048400.1 sequence-type=CDS polypeptide=Glyma.15g048400.1.p locus=Glyma.15g048400 ID=Glyma.15g048400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGATGATGGTGCTGATCCATTTCCAGTGTTGACAAGTGTGTATAGAGTATCTGGTTCCAAAAACAGTCAGCTGGGCTGGAATGTAGCCAATTCTCAGCAAACTGTTGACTCCAGTGTAAACAACTCAAGGCAGTTACAGAGCATTTCTGATGGCAGTGCTCCAAGACCCTGGTTTTCTCAAAATTTTAGACCAAATGCATGGGAAGTTCCAGGTGTGATTCAGAAGCTGAGGCCGGCAAAGCGGGGTAATGACGGATTGGCTTTGACGGGAAGTGGAATTTTGAACGACAAGTTGCCTCCTGAGTCAGTAATATCTCCAACATCAGAGACAGAGAGAGGGACAGGGTTAAATTCATCTGTTGGAGTCGTTACAACTACATCCAAGGATTGTGAAAATGTTGAATGCAAGGACAAGGATAAGAGAATCCCAGAACCCCAATGTGAAAACAACAATGATCAGATTGTTGACAATGGATCTGATATTGTTTTTGATAGTGATGATGATTGTTTTTTAGATGACATTGACTCAGATACTGGAGAGAGAAGCCATGAACAGTGCAAAAAGAGCAAGTGGCTCAGGAATTTCTTTGATAAATTAAATGCACTCACCAATGAGGAGATAAGTTCATTAGACAGGCAGTGGCATTGCCCAGCATGCCAAGGGGGTTCTGGTGCTATTGATTGGTACAAAGGGCTGCATCCCCTTTTGGATCATTCCAGAACAATACAAACAAAGAGGGCAAGACTGCACCGGATGTTTGCTGAAACTTTGGAGGAAGAGTGTTTCAGGAGAAGAGCTCCATTAACAACAGTCAGTGACGTCCATGATATATGGGAGGGTCTTGATAAGAAAGTCAAGGATCATGAAATAGTTTGGCCCCCAATGGTTATCATCATGAATACAAGATACGAGCAGGACGAAAGTAACAAGTGGAATGGAATGGGGAACCAAGGACTCCTTGATTGCTTCTGTGACTATGCAGCATTGAAGGCTCGACACTCGTATGGTCCACAAGGGCACCGAGGGATGAGTGCCTTAATTTTTGAGGAATCCACGGCAGGTTATCTAGAAGCTGTGCGGCTCCACAAGCATTTTAAAGAGCAAGGAAGAGATAGGGAGGCTTGGGATTGCTATCGGAATCCATTTCTCCCAGGTGGGAAGCGCCAACTTTATGGTTACTTGGCTTCTAAAGAAGATTTAGATATTTTCAACAAGCACTCTAGAGGAAAGACAAAATTGAAGTTTGAAATGAGATCATATCAAGAGATGGTTGAGAGCAAGATAAAACATATTAATGATGATAGTCGGAAGCTTGACTATTATAAGAGCATGGTAGCCAAAGAACAAATCAAATCACAAGTAGGTGCAGACTCTTTATTGAGATTAAGTGAGAAGTTAAGCTTGACAACCGAAGAAAACCGTGTTGATCAACAAAATAAGGAGATGGATGCACTAGAAAAAAATTTCCAGAGCCAAATCCTAGACATTCAACAAGCCATAGCTGCAAAGGAAGATAAGTTTGTGAAATTACAGCAGGCAATGCAAGAAAAAGTGAAAGAGTCCTGCGGAGAATCTTCTGAGAAAGAGGACAAGGTAGAAAATATCTCTTGTTTCCTGAAGCCCCAAGACAAGGAGATGAAGCAGTTTGAGGCAGAGAGAGAGAAAATCATAAAAATTCATGAAGAGAAAAGGTTGGCTCTGAAGAAGAAGCATTGGCAAGAGCAGGTTGAACTTGAGAAGGAGTTAGAGAATGAACGGACGCAGCTCATGGACAAGTACACTTGCAACCAGACTCAAGAAGAAAACTGTTATGTGGATCATTAA
Predicted protein sequences of Glyma.15g048400
>Glyma.15g048400.1.p sequence-type=predicted peptide transcript=Glyma.15g048400.1 locus=Glyma.15g048400 ID=Glyma.15g048400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADDGADPFPVLTSVYRVSGSKNSQLGWNVANSQQTVDSSVNNSRQLQSISDGSAPRPWFSQNFRPNAWEVPGVIQKLRPAKRGNDGLALTGSGILNDKLPPESVISPTSETERGTGLNSSVGVVTTTSKDCENVECKDKDKRIPEPQCENNNDQIVDNGSDIVFDSDDDCFLDDIDSDTGERSHEQCKKSKWLRNFFDKLNALTNEEISSLDRQWHCPACQGGSGAIDWYKGLHPLLDHSRTIQTKRARLHRMFAETLEEECFRRRAPLTTVSDVHDIWEGLDKKVKDHEIVWPPMVIIMNTRYEQDESNKWNGMGNQGLLDCFCDYAALKARHSYGPQGHRGMSALIFEESTAGYLEAVRLHKHFKEQGRDREAWDCYRNPFLPGGKRQLYGYLASKEDLDIFNKHSRGKTKLKFEMRSYQEMVESKIKHINDDSRKLDYYKSMVAKEQIKSQVGADSLLRLSEKLSLTTEENRVDQQNKEMDALEKNFQSQILDIQQAIAAKEDKFVKLQQAMQEKVKESCGESSEKEDKVENISCFLKPQDKEMKQFEAEREKIIKIHEEKRLALKKKHWQEQVELEKELENERTQLMDKYTCNQTQEENCYVDH*






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