SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33270.1 | AT | Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016042 | GO-bp | lipid catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0019433 | GO-bp | triglyceride catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055088 | GO-bp | lipid homeostasis | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005811 | GO-cc | lipid droplet | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0004806 | GO-mf | triglyceride lipase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG3773 | KOG | Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase | JGI | N/A | IEA |
| PTHR12406 | Panther | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 (IPLA2)-RELATED | JGI | N/A | IEA |
| PTHR12406:SF1 | Panther | JGI | N/A | IEA | |
| PF01734 | PFAM | Patatin-like phospholipase | JGI | N/A | IEA |
| LIPAS-PWY | SoyCyc9 | triacylglycerol degradation | Plant Metabolic Network | ISS | |
| GN7V-67039 | SoyCyc9-rxn | triacylglycerol lipase | Plant Metabolic Network | ISS |
|
Glyma.15g047800 not represented in the dataset |
Glyma.15g047800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g184900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g05300 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g047800.1 sequence-type=CDS polypeptide=Glyma.15g047800.1.p locus=Glyma.15g047800 ID=Glyma.15g047800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTCCCTGTATCTGCTCCTCCCATGCTCAGCGTCTCCCCTATGCAGCAAATCTAAACCCTAATTCTTCTATTCTCCGTCGACGCGCACAATTCATCAGCTTCGCCTCGAATTCTTCTCCACCTCAAGACGAGGAGGCCACTGCCAAGAAATCGTTTGCCGTGGCGACCGGCGAGCTGTTTCTAGGGCTGGCGACGCGCCTGATTAAGAGCCGAAACAAGGGAAGCAGCAGCCTCGCAGAAGATTCGGGTTCGGTGGGCATGTTTGAGAATAATTCTGAGGAGAGAATCGGAGCGGTGGTGGAGGACGAGATTGATCCCGACGTGGTTTGGGAGCAAAGAGTGAAAGACGTGGAGGCGGAGCGCAATAGGTATAGCCGCCTCGTCACCAGCCCTGGCTTTAGTTTCTCTGCCGCTGGACTTCTCTTCCCTTACCATCTTGGTGTCGCTCAATTTCTCATTCAAAATGGTTACATTAAGGAAACAACACCGTTAGCCGGTTCCTCAGCTGGAGCTATAGTTTGTGCTGTGATTGCTTCCGGAGCTAGTATGGAAGAAGCCTTGAATGCTACTAAAATATTGGCTGAAGATTGCCGCAATCGGGGGACTGCATTCCGGCTTGGGGCTGTTCTACGTGATATTCTTGACAAGTTTTTGCCAGATGATGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTGACACAGCTTCTTTGGAGACCCCGAGGTTTGTTGGTAGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACCTCTTCCTTTATTCCAGGATATCTTGCACCAAGGCCAGCAACGATGTTTCGGAATCGACTATGCATTGATGGGGGTTTGACATTGTTTATGCCACCGACATCTGCTGCACAAACGGTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAGCTTTTCAACTGGGCACTTGAACCAGCCGAAGATGCAATTCTTGACCGATTCTTTGAGCTTGGATATCTAGATGCTTCTGTCTGGGCAAAGGAAAACCCAGTTGAAGTAATAGTTCAAGATGATAGTCCTGCGTTTGGAAGTAGCAGTGCGACATAG
>Glyma.15g047800.1.p sequence-type=predicted peptide transcript=Glyma.15g047800.1 locus=Glyma.15g047800 ID=Glyma.15g047800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGPCICSSHAQRLPYAANLNPNSSILRRRAQFISFASNSSPPQDEEATAKKSFAVATGELFLGLATRLIKSRNKGSSSLAEDSGSVGMFENNSEERIGAVVEDEIDPDVVWEQRVKDVEAERNRYSRLVTSPGFSFSAAGLLFPYHLGVAQFLIQNGYIKETTPLAGSSAGAIVCAVIASGASMEEALNATKILAEDCRNRGTAFRLGAVLRDILDKFLPDDVHIRSNGRVRVAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSAAQTVRVCAFPASRLGLQGIGISPDCNPENVCSPRQLFNWALEPAEDAILDRFFELGYLDASVWAKENPVEVIVQDDSPAFGSSSAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
