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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29900.1 | AT | carbamoyl phosphate synthetase B | JGI | N/A | IEA |
| GO:0000050 | GO-bp | urea cycle | EnsemblGenomes | N/A | IEA |
| GO:0006526 | GO-bp | arginine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006807 | GO-bp | nitrogen compound metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004087 | GO-mf | carbamoyl-phosphate synthase (ammonia) activity | EnsemblGenomes | N/A | IEA |
| GO:0004088 | GO-mf | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008716 | GO-mf | D-alanine-D-alanine ligase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG0370 | KOG | Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) | JGI | N/A | IEA |
| PTHR11405 | Panther | CARBAMOYLTRANSFERASE RELATED | JGI | N/A | IEA |
| PTHR11405:SF15 | Panther | JGI | N/A | IEA | |
| PF00289 | PFAM | Carbamoyl-phosphate synthase L chain, N-terminal domain | JGI | N/A | IEA |
| PF02142 | PFAM | MGS-like domain | JGI | N/A | IEA |
| PF02786 | PFAM | Carbamoyl-phosphate synthase L chain, ATP binding domain | JGI | N/A | IEA |
| PF02787 | PFAM | Carbamoyl-phosphate synthetase large chain, oligomerisation domain | JGI | N/A | IEA |
| ARGSYN-PWY | SoyCyc9 | L-arginine biosynthesis I (via L-ornithine) | Plant Metabolic Network | ISS | |
| ARGSYNBSUB-PWY | SoyCyc9 | L-arginine biosynthesis II (acetyl cycle) | Plant Metabolic Network | ISS | |
| GLUTAMINDEG-PWY | SoyCyc9 | L-glutamine degradation I | Plant Metabolic Network | ISS | |
| PWY-4984 | SoyCyc9 | urea cycle | Plant Metabolic Network | ISS | |
| PWY-5686 | SoyCyc9 | UMP biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-7060 | SoyCyc9 | ornithine-citrulline shuttle | Plant Metabolic Network | ISS | |
| PWY-7211 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY0-162 | SoyCyc9 | superpathway of pyrimidine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-62090 | SoyCyc9-rxn | carbamoyl-phosphate synthase (glutamine-hydrolysing) | Plant Metabolic Network | ISS |
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Glyma.15g045100 not represented in the dataset |
Glyma.15g045100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g328600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g05021 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g045100.1 sequence-type=CDS polypeptide=Glyma.15g045100.1.p locus=Glyma.15g045100 ID=Glyma.15g045100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAATGGCCTATTGCATCTCCCAGCTCCCCAAACTCCCACTCCTCCCTTCTCTCCCTCATTCCCGTTCCTCTAAAACCCTCCCTTCACTAAACCACGCCGTTCCCCCCACCCTTCTCCGTGCATGTCCTCCTCCCACCACGCGCCTCAACCCCGCGCGCGTCCGATGCTCCGCCGTCGCCGTCGCCGAACCTCCTGCCCCCAAACTCGGCAAGCGGACCGACATAAAGAAGATCCTGATCCTCGGTGCGGGCCCCATCGTCATCGGCCAAGCGTGCGAGTTCGACTACTCCGGCACCCAAGCGTGCAAGGCCCTCCGTGAGGAAGGGTACGAGGTTGTCCTCATCAACTCCAACCCCGCCACCATCATGACTGATCCCGAAACCGCCGACCGCACCTATATCACCCCCATGACGCCGGACCTCGTGGAGCGCGTCCTCGAATCGGAGCGTCCCGACGCGCTCCTCCCCACCATGGGCGGCCAGACCGCCCTCAACCTCGCTGTCGCCCTCTCCGAGAGCGGCGCCCTCGAAAAATATGGCGTGGAACTCATCGGAGCAAAGCTCGACGCAATCAAGAAGGCTGAGGACAGGGAACTCTTCAAACAGGCCATGAAGAATATCGGGATTAAGACCCCTCCCTCCGGCATTGGCACCACTCTTGATGAGTGTCTCAGCATTGCCAATGATATCGGGGAATATCCGTTAATTGTGCGGCCGGCGTTCACGCTTGGGGGTACCGGCGGCGGAATTGCGTATAACAGAGAAGATTTGCTGGAAATTTGCAAGGCTGGGATTGCTGCTAGCTTGACTAATCAGGTTTTGATTGAGAAGTCTCTGTTGGGGTGGAAGGAGTATGAGCTTGAGGTTATGAGGGACTTGGCTGACAATGTTGTTATCATTTGCTCTATTGAGAATATTGATCCTATGGGGGTGCATACCGGGGATTCGATTACTGTTGCACCGGCGCAGACTCTGACGGATAAGGAGTACCAGAGGCTGAGGGATTATTCGATTGCTATAATTAGAGAGATTGGTGTGGAGTGTGGAGGGTCTAATGTGCAGTTTGCGGTTAATCCCGATAATGGTGAGGTCATGGTCATCGAGATGAACCCCAGAGTTTCCAGGTCTTCGGCTCTGGCGTCGAAGGCTACTGGGTTTCCCATTGCAAAGATGGCGGCAAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGATTCCACGGTTTGCTTTTGAGAAGTTTCCTGGTTCTAAGCCAATATTGACGACACAGATGAAATCAGTTGGTGAGGCGATGGCTGTAGGGCGAACCTTCCAAGAGTCATTTCAAAAAGCAGTACGCTCTCTAGAGTATGGATACCCTGGATGGGGGTGTTCACAAGTGAAGGAGTTGAACTATGACTTGGAGCAATTGAAGTATAGCCTCCGAGTTCCTAACCCGGAGCGCATTCATGCCATCTATGCTGCAATGAAAAGAGGGATGCAGATTGATGAAATCTTTGAGCTGAGTTACATTGACAAATGGTTTCTCACGCAGCTAAAGGAGCTGGTTGATGTGGAAAGTTTCTTGCTGTCTCACAATTTGTCTGATTTGACAAATATTGATTTCTATGAGGTGAAGAGAAGAGGGTTCAGTGATAAACAGATAGCATTTGCAACTAAATCCACTGAGAAAGAAGTTCGCAATAGGCGGTTGTCTCTAGGTGTCACTCCAGCATATAAGCGAGTAGATACCTGTGCAGCGGAATTTGAAGCTAATACGCCTTATATGTATTCTTCTTATGATTTTGAGTGTGAATCGGCTCCCACTACTAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGGATGCAGGATATGAGACAATCATGGTGAACTCAAACCCCGAGACAGTTTCCACAGATTATGACACTAGTGACCGTCTATACTTTGAACCCTTGACCGTTGAAGATGTTTTGAACATTATTGATTTGGAAAGGCCTGATGGTATCATTGTACAATTTGGTGGTCAAACACCATTGAAGTTATCTCTCCCCTTACAACAATACCTAGATGAACACAAGCCAGCATGTGCTAGTGGGGTTGGTCATGTACGCATTTGGGGAACATCTCCTGATTCCATAGATATTGCTGAGGACCGAGAGAGGTTCAACGTGATGCTTCATGAACTAAAGATTGAACACCCAAAAGGAGGAATTGCTAGGAGTGAAACTGATGCACTTGCCATTGCAGCAGATATTGGATACCCAGTTGTTGTTCGTCCTTCTTATGTTTTGGGTGGTCGAGCAATGGAGATTGTATATAGCGATAATAAACTGGTGACTTACCTTGAAAATGCTGTTGAGGTGGATCCAGAACGCCCTGTATTAATTGACAAGTATTTATCTGATGCCTGTGAGATTGATGTTGATGCACTGGCTGACTCACAAGGTAATGTAGTCATTGGTGGGATAATGGAGCACATTGAACAGGCTGGGATACATTCTGGTGACTCTGCCTGCTCTATTCCCACCAGAACTGTTCCTGCTTCTTGCTTGGAGACAATCAGGTCGTGGACAGTAAACTTGGCTAAACAATTGAATGTTTGTGGGCTCATGAATTGTCAGTATGCAATAACTCCATCAGGGGATGTATTTTTGCTAGAGGCCAACCCTCGAGCTTCTCGTACAGTTCCATTTGTATCAAAAGCAATTGGCCATCCCTTGGCTAAATATGCTTCCCTTGTCATGTCTGGAAAGACCCTCTATGATTTACAGTTTACAAAAGAAGTTATCCCTAAATATGTGTCAGTCAAGGAAGCTGTTCTTCCTTTTTCAAAGTTCCCAGGCTGTGACGTGTTTTTAAGTCCTGAGATGCGAAGTACTGGTGAGGTCATGGGTATTGACCCTTCTTATAATATTGCATTTGCTAAGGCACAAATTGCTGCTGGCCAGAAGTTACCACTTTCTGGTACCGTGTTCCTTAGTTTGAATGACTTAACAAAGCCACATCTTGAGAAGATAGCAAAGGCTTTTGTTGAGAATGGTTTCAAGATTGCTGCTACCAGTGGAACAGCTCATGTTCTTAACTTAGCTAAAATTCCAGCGGAGCGAGTGCTGAAGTTGCATGAAGGGAGGCCTCATGCTGGTGACATGATTGCCAATGGGGACATTCAGCTGATGGTGGTAACCAGTTCAGATGATGCACTTGATCGGATAGATGGTCTGGCCCTGAGAAGGATGGCTTTGGATTACAAGGTTCCTATCGTGACAACAGTTAATGGAGCTCTGGCAACTGCTGAAGCTATAAACAGCTTGAAGGCCAACTCTATCAAAATGATCGCACTTCAGGACTTCATTGATGGTGAATTTAATGAGTGA
>Glyma.15g045100.1.p sequence-type=predicted peptide transcript=Glyma.15g045100.1 locus=Glyma.15g045100 ID=Glyma.15g045100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAMAYCISQLPKLPLLPSLPHSRSSKTLPSLNHAVPPTLLRACPPPTTRLNPARVRCSAVAVAEPPAPKLGKRTDIKKILILGAGPIVIGQACEFDYSGTQACKALREEGYEVVLINSNPATIMTDPETADRTYITPMTPDLVERVLESERPDALLPTMGGQTALNLAVALSESGALEKYGVELIGAKLDAIKKAEDRELFKQAMKNIGIKTPPSGIGTTLDECLSIANDIGEYPLIVRPAFTLGGTGGGIAYNREDLLEICKAGIAASLTNQVLIEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPDNGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSKPILTTQMKSVGEAMAVGRTFQESFQKAVRSLEYGYPGWGCSQVKELNYDLEQLKYSLRVPNPERIHAIYAAMKRGMQIDEIFELSYIDKWFLTQLKELVDVESFLLSHNLSDLTNIDFYEVKRRGFSDKQIAFATKSTEKEVRNRRLSLGVTPAYKRVDTCAAEFEANTPYMYSSYDFECESAPTTRKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTVEDVLNIIDLERPDGIIVQFGGQTPLKLSLPLQQYLDEHKPACASGVGHVRIWGTSPDSIDIAEDRERFNVMLHELKIEHPKGGIARSETDALAIAADIGYPVVVRPSYVLGGRAMEIVYSDNKLVTYLENAVEVDPERPVLIDKYLSDACEIDVDALADSQGNVVIGGIMEHIEQAGIHSGDSACSIPTRTVPASCLETIRSWTVNLAKQLNVCGLMNCQYAITPSGDVFLLEANPRASRTVPFVSKAIGHPLAKYASLVMSGKTLYDLQFTKEVIPKYVSVKEAVLPFSKFPGCDVFLSPEMRSTGEVMGIDPSYNIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLEKIAKAFVENGFKIAATSGTAHVLNLAKIPAERVLKLHEGRPHAGDMIANGDIQLMVVTSSDDALDRIDGLALRRMALDYKVPIVTTVNGALATAEAINSLKANSIKMIALQDFIDGEFNE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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