SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.15g031100

Feature Type:gene_model
Chromosome:Gm15
Start:2487422
stop:2494223
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g031100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G31510.1AT IBR domain-containing protein JGI N/AIEA
GO:0000209GO-bp protein polyubiquitination EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0032436GO-bp positive regulation of proteasomal ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0000151GO-cc ubiquitin ligase complex EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0031624GO-mf ubiquitin conjugating enzyme binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG1815 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR11685Panther RBR FAMILY (RING FINGER AND IBR DOMAIN-CONTAINING) JGI N/AIEA
PTHR11685:SF10Panther E3 UBIQUITIN-PROTEIN LIGASE ARIH1 JGI N/AIEA
PF01485PFAM IBR domain JGI N/AIEA

Proteins Associated with Glyma.15g031100
LocusGene SymbolProtein Name
ARI3 putative E3 ubiquitin-protein ligase ARI3

Expression Patterns of Glyma.15g031100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g031100
ParalogEvidenceComments
Glyma.13g343300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g031100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g03590 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g031100
>Glyma.15g031100.1 sequence-type=CDS polypeptide=Glyma.15g031100.1.p locus=Glyma.15g031100 ID=Glyma.15g031100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCCGAGGACGATATGCACGACGCCAACGATGTGGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAGGACCCTCCCATGGATTACTACAGTGACTACGACGACAACGCCGACGATTACTTCGACGACGCCGACGATTCTGACCGGATTGAGTCTCGCCGCCCCGAGCAAAACTTTACCATATTGAGGGAACTGGATATCCGGCAAAGGCAGGAAGACGACATAGCTAGAGTAGCGGCAGTTCTTTCCATACCTCGGGTTTCTGCGAGCATCCTACTTCGTCACTACAACTGGAGTGTTAGTAAGGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTCCGAAAAACAGTTGGTTTGTTGGAGAAGCCAGTTTTCCAGAATTCTAATACTAGAGAGCTTACTTGTGGCATCTGTTTTGAAATGTATCCTCGTGCACGGGTTGAATCTACTGCTTGTGGCCACCCTTACTGCTATTCATGCTGGGCAGGATATTTTAGCACATCAATTAATGATGGTCCGGGATGTTTGGTGCTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCTGATGAAGATAAACAGAAGTATGACCGTTATCTTCTCAGATCTTATATTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAACTGCACAGAGGAGGCTCACCGTCCAGTGGACTGTGGCACTGTGTCAAAGTGGATTTTGAAAAATAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCTCCTTGTAAATTTGAGTTTTGCTGGCTATGCCTTGGTGCATGGTCGGACCATGGTGAAAGGACTGGTGGATTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCGAGGCAAAAAGCTCTTGCAGATCTACACCAAATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACGGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTGAAATGGACATATTCATATGGGTACTATTTACCTGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTGAATGCTGATGGCCCATCTAAAGATTTCAATGACTTTCGAACCAAACTAGCTGGATTGACCAGTGTAACTAGAAACTACTTTGAGAATTTGGTGAGGGCATTAGAGAATGGTTTAGTTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGAGGAAGAGGAAAAGCGACTATTCGAACTATATCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAGCACTGTACCTATGCCAATGTTAAGTCTGCCACCACATGTCAAATGTGCAATCAACAGCGTCGATGA
Predicted protein sequences of Glyma.15g031100
>Glyma.15g031100.1.p sequence-type=predicted peptide transcript=Glyma.15g031100.1 locus=Glyma.15g031100 ID=Glyma.15g031100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSEDDMHDANDVESLDDDFYSGETEDPPMDYYSDYDDNADDYFDDADDSDRIESRRPEQNFTILRELDIRQRQEDDIARVAAVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKTVGLLEKPVFQNSNTRELTCGICFEMYPRARVESTACGHPYCYSCWAGYFSTSINDGPGCLVLRCPDPSCGAAVGQDMINLLASDEDKQKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYSYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSKDFNDFRTKLAGLTSVTRNYFENLVRALENGLVDVDSNGAASSKATSSKNAAGSSKGRGGRGKATIRTISSRMTDDNHWSCEHCTYANVKSATTCQMCNQQRR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo