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Report for Sequence Feature Glyma.15g028900

Feature Type:gene_model
Chromosome:Gm15
Start:2325622
stop:2329211
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g028900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G06130.1AT glyoxalase 2-4 JGI N/AIEA
AT1G06130.2AT glyoxalase 2-4 JGI N/AIEA
GO:0019243GO-bp methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione EnsemblGenomesN/AIEA
GO:0004416GO-mf hydroxyacylglutathione hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
KOG0813 KOG Glyoxylase JGI N/AIEA
PTHR11935Panther BETA LACTAMASE DOMAIN JGI N/AIEA
PTHR11935:SF7Panther PROTEIN Y17G7B.3 JGI N/AIEA
PF00753PFAM Metallo-beta-lactamase superfamily JGI N/AIEA
PWY-5386SoyCyc9 methylglyoxal degradation I Plant Metabolic Network ISS
GN7V-62404SoyCyc9-rxn hydroxyacylglutathione hydrolase Plant Metabolic Network ISS

Proteins Associated with Glyma.15g028900
LocusGene SymbolProtein Name
GLYII-9 putative hydroxyacylglutathione hydrolase

Expression Patterns of Glyma.15g028900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g028900
ParalogEvidenceComments
Glyma.13g345400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g028900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g03320 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g028900
>Glyma.15g028900.2 sequence-type=transcript locus=Glyma.15g028900 ID=Glyma.15g028900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCTCAGAAAATAAAATGAATAATGAGGAACATGAAGAAGGGGTGGTGGTTAGGGAGAGAAAAGCAACTTCCTTTTCAACCAAATAGTGCCAACCCACTCTTTAACTATTTCCCTTTTCAACCATTGCTTAGATGCTCTCTAAGCCTTCATCTGCTATGCCCACTTTTCCTTCTTCCATGGTTTGCctctctctctctctctctctctactctcCTTTCATTTCAGAAATCATGGGGAAATAAACATAATTAATCTCCGAAATAAACAAAACATTTTTCGTGACATTCGATGAATGATATGAAGGTGAGAAGTGGGTTGTGCGTGTGGCCAAATGTGAGACAACTTTGCTTTAGAAAAGGCATTCTATATGGGTTTATGCGATTGTTTTCTACTCCGTTGAAAACGCTGCGTGGAGCTAGCCGCTCGCTGAGAGTGGCTCAATTTTGCAGTGTTGCCAATATGTCTTCCTCATTGCAGATTGAATTGGTACCTTGCCTGAAGGACAATTATGCATATCTGTTACATGATGTAGATACGGGTACAGTTGGTGTTGTTGATCCTTCTGAAGCTGTGCCTGTCATAGATGCCTTGAGTAGGAAAAATCGAAATTTGACATACATACTCAACACTCACCATCATCATGATCACACGGGTGGAAATGTAGAATTGAAAGCAAGATACGGGGCAAAGGTGATTGGTTCAGGAACTGACAAGAAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACACTTTGTTCAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAGATGCTATCTTCTCTTAAAAAGATCATGTCTTTGCCAGATAATACAAATATATACTGTGGACACGAGTATACATTGAATAATACAAAGTTTGCATTGTCTATCGAACCTGAAAACGAGGAACTTCAATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTGCCCACGATTCCCACCACACTGAAGATGGAAAAGGCTTGTAATCCATTCCTTCGTACATCCAGTGCTGCAATCCGGCAATCACTAAACATTGCAGCCACAGCAAATGATGCAGAAGCCCTTGGTGGCATCCGGCAAGCAAAGGATAATTTTTAGATTTTTGACTTACAATATTTTGAACGTTTGAAGAAACTTGTTCTATGTAGGGTAGGATATAAATCCATCCGTGGAATAATATATGCTTGATGCTATGTTCTCGATGTATATGATTTCAGAAATTTTGGTTCTATTTGGAAGTGTGTGTACTTGGTGCCTAAGAAAGTTGTGGTGCGATTTAGAGGGGTACAATGCACACATGACACTCACTCAGTGTTCTGTTCAGTTGAGGATGTGTGGCGGGAAGAAGGGTAGCTAGAAGTTTAAAGTAAACTCCTTGTCCTTGGCCAATGGCCACCCACCCCACTTCCCTCAGAAGAACAAGAACCTTGTAAATGTATGGGTCTGTACTCTGGACTTAGAGCGCGTATATTTGGCTTCTTCAGGATCTATCTGCAAGTCTCAACATACAAATAAAATAAATCAA
Coding sequences of Glyma.15g028900
>Glyma.15g028900.1 sequence-type=CDS polypeptide=Glyma.15g028900.1.p locus=Glyma.15g028900 ID=Glyma.15g028900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCTCTAAGCCTTCATCTGCTATGCCCACTTTTCCTTCTTCCATGGTGAGAAGTGGGTTGTGCGTGTGGCCAAATGTGAGACAACTTTGCTTTAGAAAAGGCATTCTATATGGGTTTATGCGATTGTTTTCTACTCCGTTGAAAACGCTGCGTGGAGCTAGCCGCTCGCTGAGAGTGGCTCAATTTTGCAGTGTTGCCAATATGTCTTCCTCATTGCAGATTGAATTGGTACCTTGCCTGAAGGACAATTATGCATATCTGTTACATGATGTAGATACGGGTACAGTTGGTGTTGTTGATCCTTCTGAAGCTGTGCCTGTCATAGATGCCTTGAGTAGGAAAAATCGAAATTTGACATACATACTCAACACTCACCATCATCATGATCACACGGGTGGAAATGTAGAATTGAAAGCAAGATACGGGGCAAAGGTGATTGGTTCAGGAACTGACAAGAAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACACTTTGTTCAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAGATGCTATCTTCTCTTAAAAAGATCATGTCTTTGCCAGATAATACAAATATATACTGTGGACACGAGTATACATTGAATAATACAAAGTTTGCATTGTCTATCGAACCTGAAAACGAGGAACTTCAATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTGCCCACGATTCCCACCACACTGAAGATGGAAAAGGCTTGTAATCCATTCCTTCGTACATCCAGTGCTGCAATCCGGCAATCACTAAACATTGCAGCCACAGCAAATGATGCAGAAGCCCTTGGTGGCATCCGGCAAGCAAAGGATAATTTTTAG

>Glyma.15g028900.2 sequence-type=CDS polypeptide=Glyma.15g028900.2.p locus=Glyma.15g028900 ID=Glyma.15g028900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGATATGAAGGTGAGAAGTGGGTTGTGCGTGTGGCCAAATGTGAGACAACTTTGCTTTAGAAAAGGCATTCTATATGGGTTTATGCGATTGTTTTCTACTCCGTTGAAAACGCTGCGTGGAGCTAGCCGCTCGCTGAGAGTGGCTCAATTTTGCAGTGTTGCCAATATGTCTTCCTCATTGCAGATTGAATTGGTACCTTGCCTGAAGGACAATTATGCATATCTGTTACATGATGTAGATACGGGTACAGTTGGTGTTGTTGATCCTTCTGAAGCTGTGCCTGTCATAGATGCCTTGAGTAGGAAAAATCGAAATTTGACATACATACTCAACACTCACCATCATCATGATCACACGGGTGGAAATGTAGAATTGAAAGCAAGATACGGGGCAAAGGTGATTGGTTCAGGAACTGACAAGAAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACACTTTGTTCAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAGATGCTATCTTCTCTTAAAAAGATCATGTCTTTGCCAGATAATACAAATATATACTGTGGACACGAGTATACATTGAATAATACAAAGTTTGCATTGTCTATCGAACCTGAAAACGAGGAACTTCAATCCTATGCTGCCCAAGTAGCTTACCTTCGAAGTAAAGGCCTGCCCACGATTCCCACCACACTGAAGATGGAAAAGGCTTGTAATCCATTCCTTCGTACATCCAGTGCTGCAATCCGGCAATCACTAAACATTGCAGCCACAGCAAATGATGCAGAAGCCCTTGGTGGCATCCGGCAAGCAAAGGATAATTTTTAG
Predicted protein sequences of Glyma.15g028900
>Glyma.15g028900.1.p sequence-type=predicted peptide transcript=Glyma.15g028900.1 locus=Glyma.15g028900 ID=Glyma.15g028900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSKPSSAMPTFPSSMVRSGLCVWPNVRQLCFRKGILYGFMRLFSTPLKTLRGASRSLRVAQFCSVANMSSSLQIELVPCLKDNYAYLLHDVDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNVELKARYGAKVIGSGTDKKRIPGIDIHLNDGDKWMFAGHEVRVMDTPGHTQGHISFYFPGSGAIFTGDTLFSLSCGKLFEGTPQQMLSSLKKIMSLPDNTNIYCGHEYTLNNTKFALSIEPENEELQSYAAQVAYLRSKGLPTIPTTLKMEKACNPFLRTSSAAIRQSLNIAATANDAEALGGIRQAKDNF*

>Glyma.15g028900.2.p sequence-type=predicted peptide transcript=Glyma.15g028900.2 locus=Glyma.15g028900 ID=Glyma.15g028900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNDMKVRSGLCVWPNVRQLCFRKGILYGFMRLFSTPLKTLRGASRSLRVAQFCSVANMSSSLQIELVPCLKDNYAYLLHDVDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNVELKARYGAKVIGSGTDKKRIPGIDIHLNDGDKWMFAGHEVRVMDTPGHTQGHISFYFPGSGAIFTGDTLFSLSCGKLFEGTPQQMLSSLKKIMSLPDNTNIYCGHEYTLNNTKFALSIEPENEELQSYAAQVAYLRSKGLPTIPTTLKMEKACNPFLRTSSAAIRQSLNIAATANDAEALGGIRQAKDNF*






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