Report for Sequence Feature Glyma.15g025900
Feature Type: gene_model
Chromosome: Gm15
Start: 2098328
stop: 2103957
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.15g025900
Expression Patterns of Glyma.15g025900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.15g025900
Paralog Evidence Comments
Glyma.13g348100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.15g025900 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma15g03000 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.15g025900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.15g025900.2 sequence-type=transcript locus=Glyma.15g025900 ID=Glyma.15g025900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
gttcgaagttgggttcaggataagggcagatGCTTGCTTGCTGCACGCTACTGAAAAAGAAAGAAAGAAAATCCGTTTGGATGAATGCGCGAGAGGAATCAACCCAATCAAGAGAAACTCTCTCTCCCTTCTACACTTTTAAGAAGAAAAAGGTTTAATTCCCCACTCATCGAATGGAACCTCGGGTTGCCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACGAATACCCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAGTACAGAGACACCTCTACCCATCAACATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATCGAGTCTCTGTGCCGTGGCTACCCCTCAGAGTTCGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATCTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACACCTGTTCGTGTTATTGTTCCTGCTGCTGGACAAAGTTCTGGGCTGCCACCAGCTGTTGTAAATGCTGATAGACAGACAGGTGGGGTGAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAACTCTGGACCTATTGCAAATGATGGAATGTCGTCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCCGGTCAAGTGGATCCACAAGGCGAGGTGCTGTATCGAGCAGTCGTGATGCAGCTGTTGGCAATGAGACTGAGCCCTCTCATCCTCTCACCATGGATGCTAGTCCAGGAGCACTCCGTAAAATCTCCAATGCTCAAAGAAGTTCACCTATCATGTCATTTGAGCACAACAGAACATCCTCTGGAAGAAACACATCAAACATGAAGAATTACGAGTCAACTCTCCGGGGTATTGAGACCCTAAATTTCAATGACGAGAGGTTACAGTATTAGCAGCTTCCATTCTCGACCATATCTATCTTAGTGTGTTGTGTTGTCTGTGCATTTTGTTGGAGGAAAGCTGCAACAAGATGGTAATTGTCACTATAAAGTATACAAGAAAGATATGCTCAAGTGGTCTCCTGACAAATCTGGCCTTGAAAAGGCTTTTGTTAATACAGTTGACCGTGTTGGTTCTACATCTACCATCGTTCCCTCTTTTATATTATTTAGTGAAGTCTCATGCTTTCTTGGCTCTTTCTTTTATGGATATATATATATCATATATCATGTTTGTTGAAATTTCATCAGCCACCAACTGGTAAAACGACCACTGCTACAATACTACAAATTTCAGGGGCTCTTTCACGTGCAAAGAAGGAACTACAAATTCGTAAGCAAGATGTGAACTGCGTTGGTTTTTATAAATTATAAACATTTTAAGTGTCAAGTGTCTTGTATGGCAGTGGAATTCCGAGTTTTATTTGAAAAAGAACTGGTTGTCATATCCGTTATTAACATGAAAGGAT
>Glyma.15g025900.3 sequence-type=transcript locus=Glyma.15g025900 ID=Glyma.15g025900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
caaaaatcctatccatatccaattaactcaaatattatctatcaaaatcagaacggattcagaatacccacttatatgagttatttttgtcTAAACTATGGTTCAATTGCAGGCTTGCTTGCTGCACGCTACTGAAAAAGAAAGAAAGAAAATCCGTTTGGATGAATGCGCGAGAGGAATCAACCCAATCAAGAGAAACTCTCTCTCCCTTCTACACTTTTAAGAAGAAAAAGGTTTAATTCCCCACTCATCGAATGGAACCTCGGGTTGCCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACGAATACCCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAGTACAGAGACACCTCTACCCATCAACATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATCGAGTCTCTGTGCCGTGGCTACCCCTCAGAGTTCGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATCTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACACCTGTTCGTGTTATTGTTCCTGCTGCTGGACAAAGTTCTGGGCTGCCACCAGCTGTTGTAAATGCTGATAGACAGACAGGTGGGGTGAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAACTCTGGACCTATTGCAAATGATGGAATGTCGTCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCCGGTCAAGTGGATCCACAAGGCGAGGTGCTGTATCGAGCAGTCGTGATGCAGCTGTTGGCAATGAGACTGAGCCCTCTCATCCTCTCACCATGGATGCTAGTCCAGGAGCACTCCGTAAAATCTCCAATGCTCAAAGAAGTTCACCTATCATGTCATTTGAGCACAACAGAACATCCTCTGGAAGAAACACATCAAACATGAAGAATTACGAGTCAACTCTCCGGGGTATTGAGACCCTAAATTTCAATGACGAGAGGTTACAGTATTAGCAGCTTCCATTCTCGACCATATCTATCTTAGTGTGTTGTGTTGTCTGTGCATTTTGTTGGAGGAAAGCTGCAACAAGATGGTAATTGTCACTATAAAGTATACAAGAAAGATATGCTCAAGTGGTCTCCTGACAAATCTGGCCTTGAAAAGGCTTTTGTTAATACAGTTGACCGTGTTGGTTCTACATCTACCATCGTTCCCTCTTTTATATTATTTAGTGAAGTCTCATGCTTTCTTGGCTCTTTCTTTTATGGATATATATATATCATATATCATGTTTGTTGAAATTTCATCAGCCACCAACTGGTAAAACGACCACTGCTACAATACTACAAATTTCAGGGGCTCTTTCACGTGCAAAGAAGGAACTACAAATTCGTAAGCAAGATGTGAACTGCGTTGGTTTTTATAAATTATAAACATTTTAAGTGTCAAGTGTCTTGTATGGCAGTGGAATTCCGAGTTTTATTTGAAAAAGAACTGGTTGTCATATCCGTTATTAACATGAAAGGAT
Coding sequences of Glyma.15g025900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.15g025900.1 sequence-type=CDS polypeptide=Glyma.15g025900.1.p locus=Glyma.15g025900 ID=Glyma.15g025900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACCTCGGGTTGCCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACGAATACCCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAGTACAGAGACACCTCTACCCATCAACATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATCGAGTCTCTGTGCCGTGGCTACCCCTCAGAGTTCGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATCTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACACCTGTTCGTGTTATTGTTCCTGCTGCTGGACAAAGTTCTGGGCTGCCACCAGCTGTTGTAAATGCTGATAGACAGACAGGTGGGGTGAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAACTCTGGACCTATTGCAAATGATGGAATGTCGTCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCCGGTCAAGTGGATCCACAAGGCGAGGTGCTGTATCGAGCAGTCGTGATGCAGCTGTTGGCAATGAGACTGAGCCCTCTCATCCTCTCACCATGGATGCTAGTCCAGGAGCACTCCGTAAAATCTCCAATGCTCAAAGAAGTTCACCTATCATGTCATTTGAGCACAACAGAACATCCTCTGGAAGAAACACATCAAACATGAAGAATTACGAGTCAACTCTCCGGGGTATTGAGACCCTAAATTTCAATGACGAGAGGTTACAGTATTAG
>Glyma.15g025900.2 sequence-type=CDS polypeptide=Glyma.15g025900.2.p locus=Glyma.15g025900 ID=Glyma.15g025900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACCTCGGGTTGCCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACGAATACCCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAGTACAGAGACACCTCTACCCATCAACATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATCGAGTCTCTGTGCCGTGGCTACCCCTCAGAGTTCGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATCTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACACCTGTTCGTGTTATTGTTCCTGCTGCTGGACAAAGTTCTGGGCTGCCACCAGCTGTTGTAAATGCTGATAGACAGACAGGTGGGGTGAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAACTCTGGACCTATTGCAAATGATGGAATGTCGTCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCCGGTCAAGTGGATCCACAAGGCGAGGTGCTGTATCGAGCAGTCGTGATGCAGCTGTTGGCAATGAGACTGAGCCCTCTCATCCTCTCACCATGGATGCTAGTCCAGGAGCACTCCGTAAAATCTCCAATGCTCAAAGAAGTTCACCTATCATGTCATTTGAGCACAACAGAACATCCTCTGGAAGAAACACATCAAACATGAAGAATTACGAGTCAACTCTCCGGGGTATTGAGACCCTAAATTTCAATGACGAGAGGTTACAGTATTAG
>Glyma.15g025900.3 sequence-type=CDS polypeptide=Glyma.15g025900.3.p locus=Glyma.15g025900 ID=Glyma.15g025900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACCTCGGGTTGCCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACGAATACCCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAGTACAGAGACACCTCTACCCATCAACATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATCGAGTCTCTGTGCCGTGGCTACCCCTCAGAGTTCGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATCTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACACCTGTTCGTGTTATTGTTCCTGCTGCTGGACAAAGTTCTGGGCTGCCACCAGCTGTTGTAAATGCTGATAGACAGACAGGTGGGGTGAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAACTCTGGACCTATTGCAAATGATGGAATGTCGTCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCCGGTCAAGTGGATCCACAAGGCGAGGTGCTGTATCGAGCAGTCGTGATGCAGCTGTTGGCAATGAGACTGAGCCCTCTCATCCTCTCACCATGGATGCTAGTCCAGGAGCACTCCGTAAAATCTCCAATGCTCAAAGAAGTTCACCTATCATGTCATTTGAGCACAACAGAACATCCTCTGGAAGAAACACATCAAACATGAAGAATTACGAGTCAACTCTCCGGGGTATTGAGACCCTAAATTTCAATGACGAGAGGTTACAGTATTAG
Predicted protein sequences of Glyma.15g025900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.15g025900.1.p sequence-type=predicted peptide transcript=Glyma.15g025900.1 locus=Glyma.15g025900 ID=Glyma.15g025900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPRVANKFRLGRKIGSGSFGEIYLGTNTQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGIEGDYNVLVMDLLGPSLEDLFNFCTRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPVRVIVPAAGQSSGLPPAVVNADRQTGGVNSRHTGWSSSDPARRRNSGPIANDGMSSRQKAPVPSDSTGSKDVMLSSSNFRSSGSTRRGAVSSSRDAAVGNETEPSHPLTMDASPGALRKISNAQRSSPIMSFEHNRTSSGRNTSNMKNYESTLRGIETLNFNDERLQY*
>Glyma.15g025900.2.p sequence-type=predicted peptide transcript=Glyma.15g025900.2 locus=Glyma.15g025900 ID=Glyma.15g025900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPRVANKFRLGRKIGSGSFGEIYLGTNTQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGIEGDYNVLVMDLLGPSLEDLFNFCTRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPVRVIVPAAGQSSGLPPAVVNADRQTGGVNSRHTGWSSSDPARRRNSGPIANDGMSSRQKAPVPSDSTGSKDVMLSSSNFRSSGSTRRGAVSSSRDAAVGNETEPSHPLTMDASPGALRKISNAQRSSPIMSFEHNRTSSGRNTSNMKNYESTLRGIETLNFNDERLQY*
>Glyma.15g025900.3.p sequence-type=predicted peptide transcript=Glyma.15g025900.3 locus=Glyma.15g025900 ID=Glyma.15g025900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPRVANKFRLGRKIGSGSFGEIYLGTNTQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGIEGDYNVLVMDLLGPSLEDLFNFCTRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPVRVIVPAAGQSSGLPPAVVNADRQTGGVNSRHTGWSSSDPARRRNSGPIANDGMSSRQKAPVPSDSTGSKDVMLSSSNFRSSGSTRRGAVSSSRDAAVGNETEPSHPLTMDASPGALRKISNAQRSSPIMSFEHNRTSSGRNTSNMKNYESTLRGIETLNFNDERLQY*