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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79870.1 | AT | D-isomer specific 2-hydroxyacid dehydrogenase family protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0016618 | GO-mf | hydroxypyruvate reductase activity | EnsemblGenomes | N/A | IEA |
| GO:0030267 | GO-mf | glyoxylate reductase (NADP) activity | EnsemblGenomes | N/A | IEA |
| GO:0048037 | GO-mf | cofactor binding | JGI | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | JGI | N/A | IEA |
| KOG0069 | KOG | Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) | JGI | N/A | IEA |
| PTHR10996 | Panther | 2-HYDROXYACID DEHYDROGENASE-RELATED | JGI | N/A | IEA |
| PTHR10996:SF15 | Panther | JGI | N/A | IEA | |
| PF00389 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | JGI | N/A | IEA |
| PF02826 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | JGI | N/A | IEA |
| PWY-5048 | SoyCyc9 | rosmarinic acid biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-5049 | SoyCyc9 | rosmarinic acid biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-5071 | SoyCyc9 | superpathway of rosmarinic acid biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5754 | SoyCyc9 | 4-hydroxybenzoate biosynthesis I (eukaryotes) | Plant Metabolic Network | ISS | |
| GN7V-43311 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.15g016100 not represented in the dataset |
Glyma.15g016100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g01920 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g016100.1 sequence-type=CDS polypeptide=Glyma.15g016100.1.p locus=Glyma.15g016100 ID=Glyma.15g016100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAATCAATCGGGGTGTTAATGACTTGCCCAATGCACAGTTACATCCAAGAAGAGCTCGCAAAACGCTTCAACCTCTTCAAACTCTGGCACTATCCCTCGTTCTCCGCCTTCGCCCAAGCCCACGCCCATTCCATTCGCGCCCTCGTCGCAAGCGCCAAAGTCGGAGTCGACGCCGCCACCATCGATTCCCTTCCCAACCTCGAGATTGTCTCCACCTACAGCGTCGGATACGACAACATCGACCTCCACAAATGCAGACACAGAGCAATCCCCGTCACCAACACGCCCAACGTTTTAACCGACGACGTGGCCGACGTAGCCATCGCCCTCGCCTTGTCCCTCCTCTGCAGAATTTGTCCCCGAAATTCCACTTGGCAATTCACACCAAAGCTTAGTGGTAAAGCGGTTGGAATAGTTGGGCTGGGAAGGATTGGTTGGGCGATTGCGAAGAGAGCCGAGGGTTTTGGGTGTCCAGTGAGTTACCATTCCAGATCTGAAAAATCAGAGACAGGGTATAAGTATTACTCTCACATCATTGATTTGGCGGCTAACTCTGAAGTGCTCTTTGTGGCGTGTACCCTTAGTGAAGAAACGCGTCACATTGTGAACCGTGGGGTTATTGATGCGTTGGGCCCGAAAGGGATTCTGATCAATGTTGGGCGAGGCCCGCACGTGGATGAGCCCGAACTGGTGGCCGCGTTGATTGAAGGGAGACTAGGTGGGGCGGGCCTTGATGTGTTTGAGAACGAGCCGGAGGTGCCTGAAGACCTGCTGGGGCTTGAGAATCTTGTCATGACCCCTCATGTGGGGACTGACACTCTGGAAACTTGCATCGCTATGGGAGACCTTGTAATTGCTAACTTAGAGGCACACTTTCTTGGCAACCCACTTTTCACACCTGTCCTTTAG
>Glyma.15g016100.1.p sequence-type=predicted peptide transcript=Glyma.15g016100.1 locus=Glyma.15g016100 ID=Glyma.15g016100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MESIGVLMTCPMHSYIQEELAKRFNLFKLWHYPSFSAFAQAHAHSIRALVASAKVGVDAATIDSLPNLEIVSTYSVGYDNIDLHKCRHRAIPVTNTPNVLTDDVADVAIALALSLLCRICPRNSTWQFTPKLSGKAVGIVGLGRIGWAIAKRAEGFGCPVSYHSRSEKSETGYKYYSHIIDLAANSEVLFVACTLSEETRHIVNRGVIDALGPKGILINVGRGPHVDEPELVAALIEGRLGGAGLDVFENEPEVPEDLLGLENLVMTPHVGTDTLETCIAMGDLVIANLEAHFLGNPLFTPVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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