Glyma.15g010900

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Report for Sequence Feature Glyma.15g010900

Feature Type:	gene_model
Chromosome:	Gm15
Start:	828400
stop:	831611
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g010900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80230.1	AT	Rubredoxin-like superfamily protein	JGI	N/A	IEA
GO:0006123	GO-bp	mitochondrial electron transport, cytochrome c to oxygen	EnsemblGenomes	N/A	IEA
GO:0022900	GO-bp	electron transport chain	EnsemblGenomes	N/A	IEA
GO:0042776	GO-bp	mitochondrial ATP synthesis coupled proton transport	EnsemblGenomes	N/A	IEA
GO:1902600	GO-bp	proton transmembrane transport	EnsemblGenomes	N/A	IEA
GO:0005740	GO-cc	mitochondrial envelope	EnsemblGenomes	N/A	IEA
GO:0005740	GO-cc	mitochondrial envelope	JGI	N/A	IEA
GO:0005751	GO-cc	mitochondrial respiratory chain complex IV	EnsemblGenomes	N/A	IEA
GO:0004129	GO-mf	cytochrome-c oxidase activity	EnsemblGenomes	N/A	IEA
GO:0004129	GO-mf	cytochrome-c oxidase activity	JGI	N/A	IEA
KOG3352	KOG	Cytochrome c oxidase, subunit Vb/COX4	JGI	N/A	IEA
PTHR10122	Panther	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	JGI	N/A	IEA
PF01215	PFAM	Cytochrome c oxidase subunit Vb	JGI	N/A	IEA
PWY-3781	SoyCyc9	aerobic respiration I (cytochrome c)	Plant Metabolic Network		ISS
GN7V-40494	SoyCyc9-rxn	cytochrome-c oxidase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.15g010900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g010900 not represented in the dataset	Glyma.15g010900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g010900

Paralog	Evidence	Comments
Glyma.13g362900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g010900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g01360	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g010900

Limit To All Plant Sequences

>Glyma.15g010900.2 sequence-type=transcript locus=Glyma.15g010900 ID=Glyma.15g010900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
catacatacatacatatatatacagatacaCGGTGAGTAGAAGAAAAGGAGAATCTAAATTCTAAGGAAACTCCTCAGATCGAAATCGAAACCATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAATCCCTACACACAGCACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAGCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATCACCATTGATTGCATCCCGTAATTTTCCTTCAGAAATAAAATTTGCAAAGAGAAGAGAGACATTTCCACCTTTCAAAATTATGAGGCATTGTTTTGTTCGGATTTGATTGGTCTATACCTTGCGGTTTTGCGACTATAGATATAGAAGATTTCTGTGATTATTTTTTAGACACACTTTGGTCACATTCGATTCAGTTATCAAATCCTTTTAGGATTTTTGTTTTTGGCTTTGCCAAATAAATAATTGATAGCAACACTAATTTTTTTAACGATTCTTGAATATATGTAGATCGTACAACTATGTGAAGCACCTAAACCACGAAAGGGATTAAGGATTACAAACTTGATCGAATTGAAATATTTACATTGCAGATGG

Coding sequences of Glyma.15g010900

Limit To All Plant Sequences

>Glyma.15g010900.1 sequence-type=CDS polypeptide=Glyma.15g010900.1.p locus=Glyma.15g010900 ID=Glyma.15g010900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAATCCCTACACACAGCACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAGCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATCACCATTGA

>Glyma.15g010900.2 sequence-type=CDS polypeptide=Glyma.15g010900.2.p locus=Glyma.15g010900 ID=Glyma.15g010900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAATCCCTACACACAGCACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAGCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATCACCATTGA

Predicted protein sequences of Glyma.15g010900

Limit To All Plant Sequences

>Glyma.15g010900.1.p sequence-type=predicted peptide transcript=Glyma.15g010900.1 locus=Glyma.15g010900 ID=Glyma.15g010900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRRLFSSSNLKSLHTALSPSRPRLAAPLLTRHVTAHSGASSVKRRVEDVVPIATGHEREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEGEDEHDVVWFWLEKGKPKECPVCSQYFKLEVVGPGGDPYGHGDHDHH*

>Glyma.15g010900.2.p sequence-type=predicted peptide transcript=Glyma.15g010900.2 locus=Glyma.15g010900 ID=Glyma.15g010900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRRLFSSSNLKSLHTALSPSRPRLAAPLLTRHVTAHSGASSVKRRVEDVVPIATGHEREEIQADLEEAPAVVKSYFDRRIVGCPGDEGEDEHDVVWFWLEKGKPKECPVCSQYFKLEVVGPGGDPYGHGDHDHH*

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