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Report for Sequence Feature Glyma.15g010400

Feature Type:gene_model
Chromosome:Gm15
Start:799119
stop:804583
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g010400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80210.1AT Mov34/MPN/PAD-1 family protein JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0070536GO-bp protein K63-linked deubiquitination EnsemblGenomesN/AIEA
GO:0070531GO-cc BRCA1-A complex EnsemblGenomesN/AIEA
GO:0070552GO-cc BRISC complex EnsemblGenomesN/AIEA
GO:0004843GO-mf thiol-dependent ubiquitin-specific protease activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1555 KOG 26S proteasome regulatory complex, subunit RPN11 JGI N/AIEA
PTHR10410Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED JGI N/AIEA
PTHR10410:SF2Panther LYS-63-SPECIFIC DEUBIQUITINASE BRCC36 JGI N/AIEA
PF01398PFAM JAB1/Mov34/MPN/PAD-1 ubiquitin protease JGI N/AIEA

Expression Patterns of Glyma.15g010400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g010400 not represented in the dataset
Glyma.15g010400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g010400
ParalogEvidenceComments
Glyma.13g363400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g010400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g01310 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g010400
>Glyma.15g010400.2 sequence-type=transcript locus=Glyma.15g010400 ID=Glyma.15g010400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTTGTAGTAGAGATTAAATAAAGAGAAGAATTAGGATTAATTGAATTGCGAGCAAGTATAACTCGGCTCAGCTCAACTCAAGTGTTTGTTTTGTTTATCGAGTTGAGGCTGAGGTGAGGCCTTGTTTGcctgaccctgaccctgaccctgacccGACGAACGACGGAGAAAGAAGAGAGATTAACCGGGGAAGGGTTTAGGGTTTGGGAGTGGAAGAATCGAATCGAATCGAATTGAGAATGTCTCTGACGAGCGTGACAATGTCGGAGGAAGTGTGGTTAAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCAAGCATTCGAAAAACGGGAGTGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTTATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCAGAATCACAGGTCAAGACCTATACCTCTGTCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCCGAGAATGTATCAACAAAGCCTGGTTACTTCGAGGCAGAGAATGCCGAGCAGGATACTGGCGATTCAAGAAGTGTTGTTGTTAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTTGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCAGACACCAACATAGTTGATGTTGATCCCATGGATATGTCAGAAAGTATGCAAGAGGCTATGCATCGTTCAAATTTGGACATGAGTGGTGCAGAGTTCGTAAGAAAAGAAATTCCCCTATATGTTTTGCCAGCCTTGTCTTTAATCAACCTTGATTCACCACTATCGTCATACACTGATCTGCAACATGTACTATTTGAAGAGGAACAAAATGCATATAATCAAGCCATCTTACAAAATATGAGGTGATAATTTGATAAACTATATGGTCATTCTTAATACTCCAATTAGCTTTTTATGGAAGCATTTTGTGTTTGTGTGTGTGTGGGGTTGAAATGGAAGCATTTTATTTGCTTCCTTAATTTCCTATGTGCCATTTGTTTATACTTTGCAGGGATGGGAAAGTGCATCCACTGACTTTCATACACCACACTTCAACTTATCAGGCTTCCTTGTGCAAGCTGATTGAATATTGTTTAAGTCCTGCAATAAATGCACTTCAAGATCGACTGAGAGAGAATGAAATTCGGTTAGCAGTTCTGAGTGAAGAAGCCAAAAGTCTGGAAGCTGAGGCATATAGAGGGAGTGAAGCAAGTGTAGGATCTCCCCGTCGAGTTGCATCTCCTGTACATCGAGGAGGTTCCTCTCCTGGTCTGAGAAACTTGCATGACTCGCCTGAATCACTCGGTTCTAGGAATGTAGCAAGTCCTGGTAGCAGGAGCAGAAAAGGATATTAAAGTGACACCCTCTTTGGGAGTAATGCTCCAAGCAATATAAACGATGATGATGGTTTACGATGGTTTTGCTAAAATGGGATGTTTAATATGTAGAATGTACATGGAAATGGTGTTGCCTCAGCAAAGTTTGCTAGTTGAAAATGATGCTAAATTAAGTATTATGCTAGTGAGAGTCTAATAGTGTAGAAATGGTGGTTTGGTGATTTCATTCACTTGGAAGAACACATTGAAATGATCAAATGGCATGCACGGTTGGATTAGAAGCATGTTAAACAGCCCCCTACTCATATGGCCACCGTTTGACCCTGATCCTTATGCTAAAGTTAAAGCAGGGTTAGATGATGAGGGAGAAAAAAAAATTGTACACAGAAATACAGAATCTTATACTATCGCAATTGCTGCTGCTATTTTCAACGTGGAAAAGGATTTTGGTTAAAAATAAAATAAAAGATTAATGACTTGTGATTTGGTTAA

>Glyma.15g010400.3 sequence-type=transcript locus=Glyma.15g010400 ID=Glyma.15g010400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTTGTAGTAGAGATTAAATAAAGAGAAGAATTAGGATTAATTGAATTGCGAGCAAGTATAACTCGGCTCAGCTCAACTCAAGTGTTTGTTTTGTTTATCGAGTTGAGGCTGAGGTGAGGCCTTGTTTGcctgaccctgaccctgaccctgacccGACGAACGACGGAGAAAGAAGAGAGATTAACCGGGGAAGGGTTTAGGGTTTGGGAGTGGAAGAATCGAATCGAATCGAATTGAGAATGTCTCTGACGAGCGTGACAATGTCGGAGGAAGTGTGGTTAAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCAAGCATTCGAAAAACGGGAGTGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTTATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCAGAATCACAGGTCAAGACCTATACCTCTGTCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCCGAGAATGTATCAACAAAGCCTGGTTACTTCGAGGCAGAGAATGCCGAGCAGGATACTGGCGATTCAAGAAGTGTTGTTGTTAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTTGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCAGACACCAACATAGTTGATGTTGATCCCATGGATATGTCAGAAAGTATGCAAGAGGCTATGCATCGTTCAAATTTGGACATGAGGTGAAACATAAGGGAAAATTGTGACTGCCGTTTCATATCTAAAGCCTCAAATCGAAGTTGACTTGATAATGACCTTGATAGCAGCTAGGTACTTGCCAATGAAGACAAACAGGAAGATAAAGGGAAGACCACAGTATCCATTTATGTCCTGAACAATAGTTGGCTTCTGTTTGAACATAAATTTTAGCCTGTCTCGAAAACATCCCCTCTAATGCTTCTTGGGGATGATTTCCCTTTGCTAATCTAAAGATTTCCTTGACACATTTGTGCCAAGTGTGTATGACAGGTCTTTAATAACTTATTACACCATAAATTTTCTATTAAGAAATATAATAACACAGGAGATGGGGATAGGCATTCTGTGGATGCTTCTCAATGTTTGTTGGTTAAAGTTTGAATGATAAATGGAAGCTATAACTGTAGAGCAACTCTTGAATATAAACAATAGCACCTTTTTCTGTCTTCTTTGTA
Coding sequences of Glyma.15g010400
>Glyma.15g010400.1 sequence-type=CDS polypeptide=Glyma.15g010400.1.p locus=Glyma.15g010400 ID=Glyma.15g010400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTGACGAGCGTGACAATGTCGGAGGAAGTGTGGTTAAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCAAGCATTCGAAAAACGGGAGTGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTTATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCAGAATCACAGGTCAAGACCTATACCTCTGTCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCCGAGAATGTATCAACAAAGCCTGGTTACTTCGAGGCAGAGAATGCCGAGCAGGATACTGGCGATTCAAGAAGTGTTGTTGTTAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTTGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCAGACACCAACATAGTTGATGTTGATCCCATGGATATGTCAGAAAGTATGCAAGAGGCTATGCATCGTTCAAATTTGGACATGAGTGGTGCAGAGTTCGTAAGAAAAGAAATTCCCCTATATGTTTTGCCAGCCTTGTCTTTAATCAACCTTGATTCACCACTATCGTCATACACTGATCTGCAACATGTACTATTTGAAGAGGAACAAAATGCATATAATCAAGCCATCTTACAAAATATGAGGGATGGGAAAGTGCATCCACTGACTTTCATACACCACACTTCAACTTATCAGGCTTCCTTGTGCAAGCTGATTGAATATTGTTTAAGTCCTGCAATAAATGCACTTCAAGATCGACTGAGAGAGAATGAAATTCGGTTAGCAGTTCTGAGTGAAGAAGCCAAAAGTCTGGAAGCTGAGGCATATAGAGGGAGTGAAGCAAGTGTAGGATCTCCCCGTCGAGTTGCATCTCCTGTACATCGAGGAGGTTCCTCTCCTGGTCTGAGAAACTTGCATGACTCGCCTGAATCACTCGGTTCTAGGAATGTAGCAAGTCCTGGTAGCAGGAGCAGAAAAGGATATTAA

>Glyma.15g010400.2 sequence-type=CDS polypeptide=Glyma.15g010400.2.p locus=Glyma.15g010400 ID=Glyma.15g010400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTGACGAGCGTGACAATGTCGGAGGAAGTGTGGTTAAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCAAGCATTCGAAAAACGGGAGTGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTTATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCAGAATCACAGGTCAAGACCTATACCTCTGTCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCCGAGAATGTATCAACAAAGCCTGGTTACTTCGAGGCAGAGAATGCCGAGCAGGATACTGGCGATTCAAGAAGTGTTGTTGTTAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTTGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCAGACACCAACATAGTTGATGTTGATCCCATGGATATGTCAGAAAGTATGCAAGAGGCTATGCATCGTTCAAATTTGGACATGAGTGGTGCAGAGTTCGTAAGAAAAGAAATTCCCCTATATGTTTTGCCAGCCTTGTCTTTAATCAACCTTGATTCACCACTATCGTCATACACTGATCTGCAACATGTACTATTTGAAGAGGAACAAAATGCATATAATCAAGCCATCTTACAAAATATGAGGTGA

>Glyma.15g010400.3 sequence-type=CDS polypeptide=Glyma.15g010400.3.p locus=Glyma.15g010400 ID=Glyma.15g010400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTGACGAGCGTGACAATGTCGGAGGAAGTGTGGTTAAGCTGCGTGACTCATGCATTGTCCACTGAGACCGAAGAGATTATGGGCCTTCTTCTTGGGGACATCAAGCATTCGAAAAACGGGAGTGTGACTGCATTGATATGGGGGGCGTCTCCTCAGACTCGGTCTGATCGGCGAAAGGATCGAGTGGAAACCAACCCTGAACAGTTGGCTGCTGCTTCTGCCTTGGCTGATAGAATGACCACATCCACTGGAAGAACAACCAGAGTTATTGGTTGGTACCATTCACACCCTCACATTACAGTTCTCCCTTCCCATGTTGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGATTTATTGGGTTGATTTTTTCCTGTTACAGTGAAGATGTAAACAAGGTAGGAAGAATTCAAGTAATTGCTTTCCAGTCATCTGATGGGAAGCAGAATCACAGGTCAAGACCTATACCTCTGTCTCCTGTAAATAGAAGCCCTGTTATTGATATTGATTCATCACCAAGTTCCTCCGAGAATGTATCAACAAAGCCTGGTTACTTCGAGGCAGAGAATGCCGAGCAGGATACTGGCGATTCAAGAAGTGTTGTTGTTAGTAAGGATGGGGGGAGATCAGACTTGGGGAATTTCTTTGCTAATGCTGATGCCAACTATCTAGGGAGAGATAAAAGTGGAGGAAACTACCATCCCAACAATTCAGACACCAACATAGTTGATGTTGATCCCATGGATATGTCAGAAAGTATGCAAGAGGCTATGCATCGTTCAAATTTGGACATGAGGTGA
Predicted protein sequences of Glyma.15g010400
>Glyma.15g010400.1.p sequence-type=predicted peptide transcript=Glyma.15g010400.1 locus=Glyma.15g010400 ID=Glyma.15g010400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLTSVTMSEEVWLSCVTHALSTETEEIMGLLLGDIKHSKNGSVTALIWGASPQTRSDRRKDRVETNPEQLAAASALADRMTTSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCYSEDVNKVGRIQVIAFQSSDGKQNHRSRPIPLSPVNRSPVIDIDSSPSSSENVSTKPGYFEAENAEQDTGDSRSVVVSKDGGRSDLGNFFANADANYLGRDKSGGNYHPNNSDTNIVDVDPMDMSESMQEAMHRSNLDMSGAEFVRKEIPLYVLPALSLINLDSPLSSYTDLQHVLFEEEQNAYNQAILQNMRDGKVHPLTFIHHTSTYQASLCKLIEYCLSPAINALQDRLRENEIRLAVLSEEAKSLEAEAYRGSEASVGSPRRVASPVHRGGSSPGLRNLHDSPESLGSRNVASPGSRSRKGY*

>Glyma.15g010400.2.p sequence-type=predicted peptide transcript=Glyma.15g010400.2 locus=Glyma.15g010400 ID=Glyma.15g010400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLTSVTMSEEVWLSCVTHALSTETEEIMGLLLGDIKHSKNGSVTALIWGASPQTRSDRRKDRVETNPEQLAAASALADRMTTSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCYSEDVNKVGRIQVIAFQSSDGKQNHRSRPIPLSPVNRSPVIDIDSSPSSSENVSTKPGYFEAENAEQDTGDSRSVVVSKDGGRSDLGNFFANADANYLGRDKSGGNYHPNNSDTNIVDVDPMDMSESMQEAMHRSNLDMSGAEFVRKEIPLYVLPALSLINLDSPLSSYTDLQHVLFEEEQNAYNQAILQNMR*

>Glyma.15g010400.3.p sequence-type=predicted peptide transcript=Glyma.15g010400.3 locus=Glyma.15g010400 ID=Glyma.15g010400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLTSVTMSEEVWLSCVTHALSTETEEIMGLLLGDIKHSKNGSVTALIWGASPQTRSDRRKDRVETNPEQLAAASALADRMTTSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCYSEDVNKVGRIQVIAFQSSDGKQNHRSRPIPLSPVNRSPVIDIDSSPSSSENVSTKPGYFEAENAEQDTGDSRSVVVSKDGGRSDLGNFFANADANYLGRDKSGGNYHPNNSDTNIVDVDPMDMSESMQEAMHRSNLDMR*






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