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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G41620.1 | AT | Nucleoporin interacting component (Nup93/Nic96-like) family protein | JGI | N/A | IEA |
GO:0006606 | GO-bp | protein import into nucleus | EnsemblGenomes | N/A | IEA |
GO:0006810 | GO-bp | transport | JGI | N/A | IEA |
GO:0006913 | GO-bp | nucleocytoplasmic transport | EnsemblGenomes | N/A | IEA |
GO:0015031 | GO-bp | protein transport | EnsemblGenomes | N/A | IEA |
GO:0016973 | GO-bp | poly(A)+ mRNA export from nucleus | EnsemblGenomes | N/A | IEA |
GO:0051028 | GO-bp | mRNA transport | EnsemblGenomes | N/A | IEA |
GO:0051292 | GO-bp | nuclear pore complex assembly | EnsemblGenomes | N/A | IEA |
GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
GO:0005643 | GO-cc | nuclear pore | EnsemblGenomes | N/A | IEA |
GO:0005643 | GO-cc | nuclear pore | JGI | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0017056 | GO-mf | structural constituent of nuclear pore | EnsemblGenomes | N/A | IEA |
KOG2168 | KOG | Cullins | JGI | N/A | IEA |
PTHR11225 | Panther | NUCLEAR PORE COMPLEX PROTEIN NUP93 (NUCLEOPORIN NUP93) (DEAD EYE PROTEIN) | JGI | N/A | IEA |
PF04097 | PFAM | Nup93/Nic96 | JGI | N/A | IEA |
Glyma.15g010000 not represented in the dataset |
Glyma.15g010000 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.13g363900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma15g01270 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g010000.2 sequence-type=transcript locus=Glyma.15g010000 ID=Glyma.15g010000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 GGAACCGAACCTTACTTTTAAAATTTTAGGGCTTAAGAGCGTTTCCCCGTAAAACCCTTTTTTCTTGCGCGGAGCTTCTTCATTCAGCTCGAGAGAGAGCCATGGCGAACGAAGACTTGGGTAGTTGGACTGATCTGCTACATTCCTCTACGAAGCTTCTCGAACAAGCTGCTCCTTCTGCtcagttccctccacttcagaggaacttagatcaattggaagcgttatccaagaagcttaaatccaagaccataaggactgaagcaccttctcaatctattgctgcaacaaggctccttgctcgtgaggggataaatgcagagcagcttgcaagggatctgaagtcatttgaactgaagacaacttttgaggatgtttttCCTGTTGAAGCAACAAGCGTTGAAGAGTATCTGCAGCAGGTTCATGAAATGGCAATGGTCTCTGCTGTCCAGGAAGCTCAGAAGGATAATCTCAGGAGTTTCAATGATTATATGATGAAAGTATTAGAGGAGGATTGGCAAAAAGAAAAACGTGATTTCCTTCAGAGTTTAAGTCGAATTTCAACATTACCTAGGACAAACATTGCTGCTAACAGCAACGTGGGTACCCTCCCGGGTCAGCTTGCATTTGTGTCTTCTACTTCACAAGTCTCTTCTGGTATGCCTAGCATGGAGATTGTTCCTCTGACTGGCAGACCTATTGTGGAGAAAAAGGCATCTGTCTATGCTGAGGTAGTGAAAAAACTGAATAAAGCAAGGGAGTCTGGGTCACCATTTAAACCTGCTGCAGCTTTCAAAGGTGCATATGAAAATTTGGGCATTGATGCTAGTGGTGGAAAGTCAGTAACGATGCGAAAGATATGGCACCTTGTTCAGATGCTGATGGGTGAGGAATCAGCCGTGCAACGTGTTTCAAAAAGGATGTCATTGATTATTGGTGCAAGACGCCACCTTGAATGGGGACATGAGAAATACATCATGGATACCATACAAAGTCATCCTGCACAAGCTGCTCTTGGTGGTGGTGTTGGGAATTTGCAAAGAATCCGTGCCTTCCTTCGGATTCGGTTGAGGGATTATGGTGTACTGGATTTTGATGCTGGCGATGCTCGGCGGCAGCCTCCTGTTGATACCACATGGCAGCAGATATATTTTTGCCTGAGGTCTGGTTATTACGATGAAGCAAGAAATGTTGCCCAATCTTCACGTGCTTCACATCAATTTGCTCCTTTGCTGACAGAGTGGATTAATAAAGGAGGGATGGTACCAGAAGAGATTGCAGCTGCTGCATCTGAGGAATGTGAAAGAATGTTGAGAACTGGTGACCGGGTAGGTCGAACTGCATATGACAAGAAAAAGTTACTTCTATATGCCATCATATCAGGTTCTCGAAGGCATATCGATCGCCTGCTTAGAGATCAGCCAAGTCTCTTTAGTACAATAGAGGATTTCTTGTGGTTCAAATTGTCAGCTGTGCGGGATTGCCCTAGTGGACCTTCATCCATTGTTCTAAGTGATGGTCTGATTCCATACAGTTTGGATGATTTGCAAAGTTACCTGAATAAATTTGAGCCCTCATACTATACAAAAAATGGAAAAGATCCTTTGGTATATCCCTATATCTTGCTGTTAAGCATTCAATTGCTTCCAGCTGTATTATACTTGTCTAAGGAAGCAGGAGATGAAGGATATAACATTGATGCTGCCCACCTTTCAATTGTGCTAGCTGATCATGGGGTCCTTTCTGAAGGTGCTGGTTCTGGGCAAAAGTTGGGAGTGATGGATGCTTATGCGGAAGTGTCCACCATTATCAGGCAGTATGGATCTATGTATTTGCGTCTTGGTGATCTCCAAATGGCCCTAGAATACTACGCACAAGCTGCTGCTGCAGTGGGTGGGGGGCAATTGTCGTGGACTGGTAGAGGTGCGGGTGAAGAAGGTGAATTGGGACGTTTTGTGACTGATCCGAAAGCAAGGCAACTATTTTTAATTGAAGCTGCATGCCACTGTCAGGAGGCTGGAATGTATGACAAGTCTATAGAAATTCAGAAGAGAGTGGGTTCCTTCTCAACGGCACTGGATACCATCAATAAGTGCCTGTCTGAAGCTATTTGTGCCCTTTTCCGTGGAAGATTAGATGGCGAGAGCCGGACTGCTGGCCTCATCCATTCTGGCAATGAGATTTTGGAGACATACACTTATTACCCAGATGCCAGTCTTCAAGAGAGAGAACATGTTTTGGAACAGCAAACTGTGTTACGACAACTTGAGTCAATATTGTCTATTCACAAATTAGTAAGGCTTGGACATTATGTTGATGCATTAAGGGAGGTTGCTAAACTTCCATTTATTCCTTTAGACCCCCGAGGCCCTGACATTGCTGTTGATGTGCTTGAAAATTTATCTCCTCATGTCCAAGCTTGTATTCCAGATCTTTTGAAGGCTGCTCTCACTTGTCTGGACAATGTGACAGACTCTGACGGATCTCTTCGTGCCTTGAGGGCTAAGATTGCGAGTTTCATTGCAAATAATTTAAAGAGGAATTGGCCTCGTGATTTATATGAGAGCGTTGCGCAGAGGCTGTGAAATTAAATCATGTGATGTTATTGTAATTACCTTTGAATTACAACAGAATGTTTGGTTAAATGTTTTCAGTAGTAGCGTAACACATGTAAAGTAGTCTCAATGATATGTCTGCTGCACCTATGCATTGGAAATATATTAGAGGAACTAGAAAAAGGAAATACGCTGCTTCTGAATATTCTCTTCACCTTTTCTCTTTTTGTTTTAGCTATTGGTAATGGTAATGTACTGTTCATTTTGTATCAATAAGAACATTACTTTCAAGTTTTAATCGCTCCGCATATGGCATG
>Glyma.15g010000.1 sequence-type=CDS polypeptide=Glyma.15g010000.1.p locus=Glyma.15g010000 ID=Glyma.15g010000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGAACGAAGACTTGGGTAGTTGGACTGATCTGCTACATTCCTCTACGAAGCTTCTCGAACAAGCTGCTCCTTCTGCTCAGTTCCCTCCACTTCAGAGGAACTTAGATCAATTGGAAGCGTTATCCAAGAAGCTTAAATCCAAGACCATAAGGACTGAAGCACCTTCTCAATCTATTGCTGCAACAAGGCTCCTTGCTCGTGAGGGGATAAATGCAGAGCAGCTTGCAAGGGATCTGAAGTCATTTGAACTGAAGACAACTTTTGAGGATGTTTTTCCTGTTGAAGCAACAAGCGTTGAAGAGTATCTGCAGCAGGTTCATGAAATGGCAATGGTCTCTGCTGTCCAGGAAGCTCAGAAGGATAATCTCAGGAGTTTCAATGATTATATGATGAAAGTATTAGAGGAGGATTGGCAAAAAGAAAAACGTGATTTCCTTCAGAGTTTAAGTCGAATTTCAACATTACCTAGGACAAACATTGCTGCTAACAGCAACGTGGGTACCCTCCCGGGTCAGCTTGCATTTGTGTCTTCTACTTCACAAGTCTCTTCTGGTATGCCTAGCATGGAGATTGTTCCTCTGACTGGCAGACCTATTGTGGAGAAAAAGGCATCTGTCTATGCTGAGGTAGTGAAAAAACTGAATAAAGCAAGGGAGTCTGGGTCACCATTTAAACCTGCTGCAGCTTTCAAAGGTGCATATGAAAATTTGGGCATTGATGCTAGTGGTGGAAAGTCAGTAACGATGCGAAAGATATGGCACCTTGTTCAGATGCTGATGGGTGAGGAATCAGCCGTGCAACGTGTTTCAAAAAGGATGTCATTGATTATTGGTGCAAGACGCCACCTTGAATGGGGACATGAGAAATACATCATGGATACCATACAAAGTCATCCTGCACAAGCTGCTCTTGGTGGTGGTGTTGGGAATTTGCAAAGAATCCGTGCCTTCCTTCGGATTCGGTTGAGGGATTATGGTGTACTGGATTTTGATGCTGGCGATGCTCGGCGGCAGCCTCCTGTTGATACCACATGGCAGCAGATATATTTTTGCCTGAGGTCTGGTTATTACGATGAAGCAAGAAATGTTGCCCAATCTTCACGTGCTTCACATCAATTTGCTCCTTTGCTGACAGAGTGGATTAATAAAGGAGGGATGGTACCAGAAGAGATTGCAGCTGCTGCATCTGAGGAATGTGAAAGAATGTTGAGAACTGGTGACCGGGTAGGTCGAACTGCATATGACAAGAAAAAGTTACTTCTATATGCCATCATATCAGGTTCTCGAAGGCATATCGATCGCCTGCTTAGAGATCAGCCAAGTCTCTTTAGTACAATAGAGGATTTCTTGTGGTTCAAATTGTCAGCTGTGCGGGATTGCCCTAGTGGACCTTCATCCATTGTTCTAAGTGATGGTCTGATTCCATACAGTTTGGATGATTTGCAAAGTTACCTGAATAAATTTGAGCCCTCATACTATACAAAAAATGGAAAAGATCCTTTGGTATATCCCTATATCTTGCTGTTAAGCATTCAATTGCTTCCAGCTGTATTATACTTGTCTAAGGAAGCAGGAGATGAAGGATATAACATTGATGCTGCCCACCTTTCAATTGTGCTAGCTGATCATGGGGTCCTTTCTGAAGGTGCTGGTTCTGGGCAAAAGTTGGGAGTGATGGATGCTTATGCGGAAGTGTCCACCATTATCAGGCAGTATGGATCTATGTATTTGCGTCTTGGTGATCTCCAAATGGCCCTAGAATACTACGCACAAGCTGCTGCTGCAGTGGGTGGGGGGCAATTGTCGTGGACTGGTAGAGGTAACGTTGATCAACAAAGGCAGAGAAATTTGATGCTGAAGCAGCTTCTAACTGAACTATTGTTAAGGGATGGAGGCATATATCTTCTACTTGGTGCAAGAGGTGCGGGTGAAGAAGGTGAATTGGGACGTTTTGTGACTGATCCGAAAGCAAGGCAACTATTTTTAATTGAAGCTGCATGCCACTGTCAGGAGGCTGGAATGTATGACAAGTCTATAGAAATTCAGAAGAGAGTGGGTTCCTTCTCAACGGCACTGGATACCATCAATAAGTGCCTGTCTGAAGCTATTTGTGCCCTTTTCCGTGGAAGATTAGATGGCGAGAGCCGGACTGCTGGCCTCATCCATTCTGGCAATGAGATTTTGGAGACATACACTTATTACCCAGATGCCAGTCTTCAAGAGAGAGAACATGTTTTGGAACAGCAAACTGTGTTACGACAACTTGAGTCAATATTGTCTATTCACAAATTAGTAAGGCTTGGACATTATGTTGATGCATTAAGGGAGGTTGCTAAACTTCCATTTATTCCTTTAGACCCCCGAGGCCCTGACATTGCTGTTGATGTGCTTGAAAATTTATCTCCTCATGTCCAAGCTTGTATTCCAGATCTTTTGAAGGCTGCTCTCACTTGTCTGGACAATGTGACAGACTCTGACGGATCTCTTCGTGCCTTGAGGGCTAAGATTGCGAGTTTCATTGCAAATAATTTAAAGAGGAATTGGCCTCGTGATTTATATGAGAGCGTTGCGCAGAGGCTGTGA >Glyma.15g010000.2 sequence-type=CDS polypeptide=Glyma.15g010000.2.p locus=Glyma.15g010000 ID=Glyma.15g010000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGAACGAAGACTTGGGTAGTTGGACTGATCTGCTACATTCCTCTACGAAGCTTCTCGAACAAGCTGCTCCTTCTGCTCAGTTCCCTCCACTTCAGAGGAACTTAGATCAATTGGAAGCGTTATCCAAGAAGCTTAAATCCAAGACCATAAGGACTGAAGCACCTTCTCAATCTATTGCTGCAACAAGGCTCCTTGCTCGTGAGGGGATAAATGCAGAGCAGCTTGCAAGGGATCTGAAGTCATTTGAACTGAAGACAACTTTTGAGGATGTTTTTCCTGTTGAAGCAACAAGCGTTGAAGAGTATCTGCAGCAGGTTCATGAAATGGCAATGGTCTCTGCTGTCCAGGAAGCTCAGAAGGATAATCTCAGGAGTTTCAATGATTATATGATGAAAGTATTAGAGGAGGATTGGCAAAAAGAAAAACGTGATTTCCTTCAGAGTTTAAGTCGAATTTCAACATTACCTAGGACAAACATTGCTGCTAACAGCAACGTGGGTACCCTCCCGGGTCAGCTTGCATTTGTGTCTTCTACTTCACAAGTCTCTTCTGGTATGCCTAGCATGGAGATTGTTCCTCTGACTGGCAGACCTATTGTGGAGAAAAAGGCATCTGTCTATGCTGAGGTAGTGAAAAAACTGAATAAAGCAAGGGAGTCTGGGTCACCATTTAAACCTGCTGCAGCTTTCAAAGGTGCATATGAAAATTTGGGCATTGATGCTAGTGGTGGAAAGTCAGTAACGATGCGAAAGATATGGCACCTTGTTCAGATGCTGATGGGTGAGGAATCAGCCGTGCAACGTGTTTCAAAAAGGATGTCATTGATTATTGGTGCAAGACGCCACCTTGAATGGGGACATGAGAAATACATCATGGATACCATACAAAGTCATCCTGCACAAGCTGCTCTTGGTGGTGGTGTTGGGAATTTGCAAAGAATCCGTGCCTTCCTTCGGATTCGGTTGAGGGATTATGGTGTACTGGATTTTGATGCTGGCGATGCTCGGCGGCAGCCTCCTGTTGATACCACATGGCAGCAGATATATTTTTGCCTGAGGTCTGGTTATTACGATGAAGCAAGAAATGTTGCCCAATCTTCACGTGCTTCACATCAATTTGCTCCTTTGCTGACAGAGTGGATTAATAAAGGAGGGATGGTACCAGAAGAGATTGCAGCTGCTGCATCTGAGGAATGTGAAAGAATGTTGAGAACTGGTGACCGGGTAGGTCGAACTGCATATGACAAGAAAAAGTTACTTCTATATGCCATCATATCAGGTTCTCGAAGGCATATCGATCGCCTGCTTAGAGATCAGCCAAGTCTCTTTAGTACAATAGAGGATTTCTTGTGGTTCAAATTGTCAGCTGTGCGGGATTGCCCTAGTGGACCTTCATCCATTGTTCTAAGTGATGGTCTGATTCCATACAGTTTGGATGATTTGCAAAGTTACCTGAATAAATTTGAGCCCTCATACTATACAAAAAATGGAAAAGATCCTTTGGTATATCCCTATATCTTGCTGTTAAGCATTCAATTGCTTCCAGCTGTATTATACTTGTCTAAGGAAGCAGGAGATGAAGGATATAACATTGATGCTGCCCACCTTTCAATTGTGCTAGCTGATCATGGGGTCCTTTCTGAAGGTGCTGGTTCTGGGCAAAAGTTGGGAGTGATGGATGCTTATGCGGAAGTGTCCACCATTATCAGGCAGTATGGATCTATGTATTTGCGTCTTGGTGATCTCCAAATGGCCCTAGAATACTACGCACAAGCTGCTGCTGCAGTGGGTGGGGGGCAATTGTCGTGGACTGGTAGAGGTGCGGGTGAAGAAGGTGAATTGGGACGTTTTGTGACTGATCCGAAAGCAAGGCAACTATTTTTAATTGAAGCTGCATGCCACTGTCAGGAGGCTGGAATGTATGACAAGTCTATAGAAATTCAGAAGAGAGTGGGTTCCTTCTCAACGGCACTGGATACCATCAATAAGTGCCTGTCTGAAGCTATTTGTGCCCTTTTCCGTGGAAGATTAGATGGCGAGAGCCGGACTGCTGGCCTCATCCATTCTGGCAATGAGATTTTGGAGACATACACTTATTACCCAGATGCCAGTCTTCAAGAGAGAGAACATGTTTTGGAACAGCAAACTGTGTTACGACAACTTGAGTCAATATTGTCTATTCACAAATTAGTAAGGCTTGGACATTATGTTGATGCATTAAGGGAGGTTGCTAAACTTCCATTTATTCCTTTAGACCCCCGAGGCCCTGACATTGCTGTTGATGTGCTTGAAAATTTATCTCCTCATGTCCAAGCTTGTATTCCAGATCTTTTGAAGGCTGCTCTCACTTGTCTGGACAATGTGACAGACTCTGACGGATCTCTTCGTGCCTTGAGGGCTAAGATTGCGAGTTTCATTGCAAATAATTTAAAGAGGAATTGGCCTCGTGATTTATATGAGAGCGTTGCGCAGAGGCTGTGA
>Glyma.15g010000.1.p sequence-type=predicted peptide transcript=Glyma.15g010000.1 locus=Glyma.15g010000 ID=Glyma.15g010000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MANEDLGSWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEALSKKLKSKTIRTEAPSQSIAATRLLAREGINAEQLARDLKSFELKTTFEDVFPVEATSVEEYLQQVHEMAMVSAVQEAQKDNLRSFNDYMMKVLEEDWQKEKRDFLQSLSRISTLPRTNIAANSNVGTLPGQLAFVSSTSQVSSGMPSMEIVPLTGRPIVEKKASVYAEVVKKLNKARESGSPFKPAAAFKGAYENLGIDASGGKSVTMRKIWHLVQMLMGEESAVQRVSKRMSLIIGARRHLEWGHEKYIMDTIQSHPAQAALGGGVGNLQRIRAFLRIRLRDYGVLDFDAGDARRQPPVDTTWQQIYFCLRSGYYDEARNVAQSSRASHQFAPLLTEWINKGGMVPEEIAAAASEECERMLRTGDRVGRTAYDKKKLLLYAIISGSRRHIDRLLRDQPSLFSTIEDFLWFKLSAVRDCPSGPSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYILLLSIQLLPAVLYLSKEAGDEGYNIDAAHLSIVLADHGVLSEGAGSGQKLGVMDAYAEVSTIIRQYGSMYLRLGDLQMALEYYAQAAAAVGGGQLSWTGRGNVDQQRQRNLMLKQLLTELLLRDGGIYLLLGARGAGEEGELGRFVTDPKARQLFLIEAACHCQEAGMYDKSIEIQKRVGSFSTALDTINKCLSEAICALFRGRLDGESRTAGLIHSGNEILETYTYYPDASLQEREHVLEQQTVLRQLESILSIHKLVRLGHYVDALREVAKLPFIPLDPRGPDIAVDVLENLSPHVQACIPDLLKAALTCLDNVTDSDGSLRALRAKIASFIANNLKRNWPRDLYESVAQRL* >Glyma.15g010000.2.p sequence-type=predicted peptide transcript=Glyma.15g010000.2 locus=Glyma.15g010000 ID=Glyma.15g010000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MANEDLGSWTDLLHSSTKLLEQAAPSAQFPPLQRNLDQLEALSKKLKSKTIRTEAPSQSIAATRLLAREGINAEQLARDLKSFELKTTFEDVFPVEATSVEEYLQQVHEMAMVSAVQEAQKDNLRSFNDYMMKVLEEDWQKEKRDFLQSLSRISTLPRTNIAANSNVGTLPGQLAFVSSTSQVSSGMPSMEIVPLTGRPIVEKKASVYAEVVKKLNKARESGSPFKPAAAFKGAYENLGIDASGGKSVTMRKIWHLVQMLMGEESAVQRVSKRMSLIIGARRHLEWGHEKYIMDTIQSHPAQAALGGGVGNLQRIRAFLRIRLRDYGVLDFDAGDARRQPPVDTTWQQIYFCLRSGYYDEARNVAQSSRASHQFAPLLTEWINKGGMVPEEIAAAASEECERMLRTGDRVGRTAYDKKKLLLYAIISGSRRHIDRLLRDQPSLFSTIEDFLWFKLSAVRDCPSGPSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYILLLSIQLLPAVLYLSKEAGDEGYNIDAAHLSIVLADHGVLSEGAGSGQKLGVMDAYAEVSTIIRQYGSMYLRLGDLQMALEYYAQAAAAVGGGQLSWTGRGAGEEGELGRFVTDPKARQLFLIEAACHCQEAGMYDKSIEIQKRVGSFSTALDTINKCLSEAICALFRGRLDGESRTAGLIHSGNEILETYTYYPDASLQEREHVLEQQTVLRQLESILSIHKLVRLGHYVDALREVAKLPFIPLDPRGPDIAVDVLENLSPHVQACIPDLLKAALTCLDNVTDSDGSLRALRAKIASFIANNLKRNWPRDLYESVAQRL*
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