SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02580.1 | AT | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative | JGI | N/A | IEA |
| GO:0006120 | GO-bp | mitochondrial electron transport, NADH to ubiquinone | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005747 | GO-cc | mitochondrial respiratory chain complex I | EnsemblGenomes | N/A | IEA |
| GO:0008137 | GO-mf | NADH dehydrogenase (ubiquinone) activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051537 | GO-mf | 2 iron, 2 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| KOG3196 | KOG | NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit | JGI | N/A | IEA |
| PTHR10371 | Panther | NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 2, MITOCHONDRIAL | JGI | N/A | IEA |
| PF01257 | PFAM | Thioredoxin-like [2Fe-2S] ferredoxin | JGI | N/A | IEA |
| PWY-3781 | SoyCyc9 | aerobic respiration I (cytochrome c) | Plant Metabolic Network | ISS | |
| PWY-4302 | SoyCyc9 | aerobic respiration III (alternative oxidase pathway) | Plant Metabolic Network | ISS | |
| PWY-5083 | SoyCyc9 | NAD/NADH phosphorylation and dephosphorylation | Plant Metabolic Network | ISS | |
| GN7V-64210 | SoyCyc9-rxn | NADH dehydrogenase | Plant Metabolic Network | ISS |
|
Glyma.15g006400 not represented in the dataset |
Glyma.15g006400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g367000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g00900 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g006400.1 sequence-type=CDS polypeptide=Glyma.15g006400.1.p locus=Glyma.15g006400 ID=Glyma.15g006400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTGGCACGCCTCGCCGCGAGTCGCTTCAACGAGATCCGTCAGATTTTCCGTCAGCCTTCTAGGGCTTTCTCAACCGCTCTGAACTACCACCTTGACACACCGGACAACAACCCTAAACTTCCATGGGAATTCACCGAGGCCAATCAAGCAAAGGTTAAGGAGATTTTGTCTCACTATCCATCCAACTATAAGCAATCTGCTACAATTCCTCTTTTAGATCTTGCCCAGCAGCAGCATGGAGGTTGGCTACCTGTTTCTGCAATGGATGCGGTAGCTAAGATTGTAGAGGTTCCTCCCATACGGGTGTATGAGGTTGCCACATTTTACTCCATGTTCAATCGAGCTAAGGTTGGGAAGTACCATCTGTTGGTTTGTGGAACAACACCTTGTATGATAAGAGGTTCACGAGGAATTGAAGAAGCCTTATTGAAACACTTGGGAGTGAAGCGCAATGAAGTAACACCAGATGGTTTGTTTTCTGTTGGAGAAATGGAATGCATGGGATGCTGTGTGAATGCTCCTATGATTACAGTGGCTGATTATTCAAATGGATCAGAGGGATATACTTATAATTACTTTGAAGATGTAACCCCAGAGAAAGTAGTTGAGATAGTAGAAAAGCTGAGAAAGGGTGAGAAGCCACCGCACGGCACCCAAAATCCCCGCCGAATTAAGAGTGGACCTGAAGGAGGGAACACTACTTTGTTAAGTGAGCCCAAGCCTCCTCCCTGCCGTGACCTGGATTCCTGCTGA
>Glyma.15g006400.1.p sequence-type=predicted peptide transcript=Glyma.15g006400.1 locus=Glyma.15g006400 ID=Glyma.15g006400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLARLAASRFNEIRQIFRQPSRAFSTALNYHLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRGIEEALLKHLGVKRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPPCRDLDSC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
