SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80560.1 | AT | isopropylmalate dehydrogenase 2 | JGI | N/A | IEA |
| GO:0009082 | GO-bp | branched-chain amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009098 | GO-bp | leucine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0009570 | GO-cc | chloroplast stroma | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0003862 | GO-mf | 3-isopropylmalate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| KOG0786 | KOG | 3-isopropylmalate dehydrogenase | JGI | N/A | IEA |
| PTHR11835 | Panther | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE | JGI | N/A | IEA |
| PTHR11835:SF13 | Panther | JGI | N/A | IEA | |
| PF00180 | PFAM | Isocitrate/isopropylmalate dehydrogenase | JGI | N/A | IEA |
| BRANCHED-CHAIN-AA-SYN-PWY | SoyCyc9 | superpathway of branched chain amino acid biosynthesis | Plant Metabolic Network | ISS | |
| LEUSYN-PWY | SoyCyc9 | L-leucine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-52900 | SoyCyc9-rxn | 3-isopropylmalate dehydrogenase | Plant Metabolic Network | ISS |
|
Glyma.15g005400 not represented in the dataset |
Glyma.15g005400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g367900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g00780 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g005400.2 sequence-type=transcript locus=Glyma.15g005400 ID=Glyma.15g005400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 GGGAAGCCAATTGCCAAACAAAAACTCAGAAAACACAGGGAAAGAAAGAGTTGAGTGATGGCGGCTTGTCTGCAACTGTGGCAATGCAAACTAGCGAGACCCTTTGACTCATTACCGGTGCGAAGGTCAATTCCTTTGAGTCTGAGGTGTTCGGCCGCGCCCTCTTCTTCCAAGCCGACGCGCTCCTACAGCATCACTCTCATCCCCGGCGACGGCATCGGCCCCGAAATCATCTCGGTGGCCAAAGACGTTCTTGTCCTCGCCGGTTATCTCGAAGGGATTAAATACGACTTCCGCGAGATGCTTATGGGTGGAGCTGCATTGGATGCCACGGGACTCCCTTTACCCCATGAAACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTCCTTGGTGCCGTCGGAGGTTATAAATGGGATAGGAACGACAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCGGCTACCGTATACTCTCCGTTAGTTGATGCTTCTACTTTGAAGAGAGAGGTTGCTGAAGGGGTTGATATCATGCTTATAAGAGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGATAATGGTGAAGAGATTGGCTTTAATACTGAGATTTATGCTACACATGAGATAGATCGCATAGCTCATTTTGCATTTAAGGTTGCTCAAAAGCGTCGTCGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGGAAGAGATTTTTGGCAATAGCACAAGAATATCCTGATGTTGAGCTCTCACACATGTATGTTGATAATGCCTCAATGCAACTAATCCGCGATCCAAAACAGTTTGACACCATGGTGACAAACAACATTTTTGGCGATATATTATCAGATGAGGCTTCAATGGTCACTGGAAGTATTGGGATGCTTCCTTCTGCTAGCCTGGGGGCTTCGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCTGGACAGGACAAGGCAAATCCATTTGCCACTGTTCTTAGTGCTGCTATGCTTTTGAGATATGGCCTAGGAGAAGAAAAGGCAGCTGAAAGAATAGAGAATGCAGTGATGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCTGGAACGAAGCTGGTAGGATGCAAACAGCTAGGTGAGGAGATACTGAAGTCAGTTGAATCTAACGTTCCTGCTGGTGCTGCTGCAGTGTGATTTTGAAACCAACTCGCCATAGCATTTTGGGTTCTGGTTTAGGTTGGAGGCCACTATGACTGCCAAAGCCGAGAAAGTCTCCCTAGTCTATTAAGTTCTGGCTTCCTTCTGTATCATGTATTTCGGTTAACACACCCAGCCTATGTATGATTGAATTTTAGAAAGTAGCAAGGTTGTTTATCTTGTATTCTTGTACCCGGGATTCTAGTTTCCCTTGCATGCGAGGTCGCTTGTAATGGTGGAATAATGATTAATGGAGTTTGTCTTGTTAAAAATAAAAAAAAAAGATTTATCAGGTTCA
>Glyma.15g005400.1 sequence-type=CDS polypeptide=Glyma.15g005400.1.p locus=Glyma.15g005400 ID=Glyma.15g005400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCTTGTCTGCAACTGTGGCAATGCAAACTAGCGAGACCCTTTGACTCATTACCGGTGCGAAGGTCAATTCCTTTGAGTCTGAGGTGTTCGGCCGCGCCCTCTTCTTCCAAGCCGACGCGCTCCTACAGCATCACTCTCATCCCCGGCGACGGCATCGGCCCCGAAATCATCTCGGTGGCCAAAGACGTTCTTGTCCTCGCCGGTTATCTCGAAGGGATTAAATACGACTTCCGCGAGATGCTTATGGGTGGAGCTGCATTGGATGCCACGGGACTCCCTTTACCCCATGAAACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTCCTTGGTGCCGTCGGAGGTTATAAATGGGATAGGAACGACAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCGGCTACCGTATACTCTCCGTTAGTTGATGCTTCTACTTTGAAGAGAGAGGTTGCTGAAGGGGTTGATATCATGCTTATAAGAGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGATAATGGTGAAGAGATTGGCTTTAATACTGAGATTTATGCTACACATGAGATAGATCGCATAGCTCATTTTGCATTTAAGGTTGCTCAAAAGCGTCGTCGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGGAAGAGATTTTTGGCAATAGCACAAGAATATCCTGATGTTGAGCTCTCACACATGTATGTTGATAATGCCTCAATGCAACTAATCCGCGATCCAAAACAGTTTGACACCATGGTGACAAACAACATTTTTGGCGATATATTATCAGATGAGGCTTCAATGGTCACTGGAAGTATTGGGATGCTTCCTTCTGCTAGCCTGGGGGCTTCGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCTGGACAGGTTGGTGTCTTTTATTTCCGTTTTTTTTCATTTGCTTCAACCGACATGCTTAACAACAGCACAATTACTCATATACAGGACAAGGCAAATCCATTTGCCACTGTTCTTAGTGCTGCTATGCTTTTGAGATATGGCCTAGGAGAAGAAAAGGCAGCTGAAAGAATAGAGAATGCAGTGATGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCTGGAACGAAGCTGGTAGGATGCAAACAGCTAGGTGAGGAGATACTGAAGTCAGTTGAATCTAACGTTCCTGCTGGTGCTGCTGCAGTGTGA >Glyma.15g005400.2 sequence-type=CDS polypeptide=Glyma.15g005400.2.p locus=Glyma.15g005400 ID=Glyma.15g005400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCTTGTCTGCAACTGTGGCAATGCAAACTAGCGAGACCCTTTGACTCATTACCGGTGCGAAGGTCAATTCCTTTGAGTCTGAGGTGTTCGGCCGCGCCCTCTTCTTCCAAGCCGACGCGCTCCTACAGCATCACTCTCATCCCCGGCGACGGCATCGGCCCCGAAATCATCTCGGTGGCCAAAGACGTTCTTGTCCTCGCCGGTTATCTCGAAGGGATTAAATACGACTTCCGCGAGATGCTTATGGGTGGAGCTGCATTGGATGCCACGGGACTCCCTTTACCCCATGAAACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTCCTTGGTGCCGTCGGAGGTTATAAATGGGATAGGAACGACAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCGGCTACCGTATACTCTCCGTTAGTTGATGCTTCTACTTTGAAGAGAGAGGTTGCTGAAGGGGTTGATATCATGCTTATAAGAGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGATAATGGTGAAGAGATTGGCTTTAATACTGAGATTTATGCTACACATGAGATAGATCGCATAGCTCATTTTGCATTTAAGGTTGCTCAAAAGCGTCGTCGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGGAAGAGATTTTTGGCAATAGCACAAGAATATCCTGATGTTGAGCTCTCACACATGTATGTTGATAATGCCTCAATGCAACTAATCCGCGATCCAAAACAGTTTGACACCATGGTGACAAACAACATTTTTGGCGATATATTATCAGATGAGGCTTCAATGGTCACTGGAAGTATTGGGATGCTTCCTTCTGCTAGCCTGGGGGCTTCGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCTGGACAGGACAAGGCAAATCCATTTGCCACTGTTCTTAGTGCTGCTATGCTTTTGAGATATGGCCTAGGAGAAGAAAAGGCAGCTGAAAGAATAGAGAATGCAGTGATGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCTGGAACGAAGCTGGTAGGATGCAAACAGCTAGGTGAGGAGATACTGAAGTCAGTTGAATCTAACGTTCCTGCTGGTGCTGCTGCAGTGTGA
>Glyma.15g005400.1.p sequence-type=predicted peptide transcript=Glyma.15g005400.1 locus=Glyma.15g005400 ID=Glyma.15g005400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAACLQLWQCKLARPFDSLPVRRSIPLSLRCSAAPSSSKPTRSYSITLIPGDGIGPEIISVAKDVLVLAGYLEGIKYDFREMLMGGAALDATGLPLPHETLSAAKQSHAVLLGAVGGYKWDRNDKHLKPETGLLQIRKELGVFANLRPATVYSPLVDASTLKREVAEGVDIMLIRELTGGIYFGEPRGFGTNDNGEEIGFNTEIYATHEIDRIAHFAFKVAQKRRRKLCSVDKANVLEASMLWRKRFLAIAQEYPDVELSHMYVDNASMQLIRDPKQFDTMVTNNIFGDILSDEASMVTGSIGMLPSASLGASGPGLFEPIHGSAPDIAGQVGVFYFRFFSFASTDMLNNSTITHIQDKANPFATVLSAAMLLRYGLGEEKAAERIENAVMDTLNRGFRTGDIYSAGTKLVGCKQLGEEILKSVESNVPAGAAAV* >Glyma.15g005400.2.p sequence-type=predicted peptide transcript=Glyma.15g005400.2 locus=Glyma.15g005400 ID=Glyma.15g005400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAACLQLWQCKLARPFDSLPVRRSIPLSLRCSAAPSSSKPTRSYSITLIPGDGIGPEIISVAKDVLVLAGYLEGIKYDFREMLMGGAALDATGLPLPHETLSAAKQSHAVLLGAVGGYKWDRNDKHLKPETGLLQIRKELGVFANLRPATVYSPLVDASTLKREVAEGVDIMLIRELTGGIYFGEPRGFGTNDNGEEIGFNTEIYATHEIDRIAHFAFKVAQKRRRKLCSVDKANVLEASMLWRKRFLAIAQEYPDVELSHMYVDNASMQLIRDPKQFDTMVTNNIFGDILSDEASMVTGSIGMLPSASLGASGPGLFEPIHGSAPDIAGQDKANPFATVLSAAMLLRYGLGEEKAAERIENAVMDTLNRGFRTGDIYSAGTKLVGCKQLGEEILKSVESNVPAGAAAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
