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Report for Sequence Feature Glyma.15g001100

Feature Type:gene_model
Chromosome:Gm15
Start:119084
stop:124240
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g001100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G50440.1AT RING/FYVE/PHD zinc finger superfamily protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1609 KOG Protein involved in mRNA turnover and stability JGI N/AIEA
PTHR23012Panther MEMBRANE ASSOCIATED RING FINGER JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA

Expression Patterns of Glyma.15g001100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g001100
ParalogEvidenceComments
Glyma.13g372600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g001100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g00320 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g001100
>Glyma.15g001100.2 sequence-type=transcript locus=Glyma.15g001100 ID=Glyma.15g001100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCAATATCAACTCCCCCTGAAAATAACAAAAACAAAAATAGTGCAGGAATAGGGGTTGATATTGTTTTGATTGTTCATTCAAGTTCAAACTTGAATTTGATTCATCTGATCTAACCAATGAAATCAAAATCGGGATTCGATTGCAGTTGCAGGTCTCTCTATTTGGTGCTTATTACTTATTATTAAGGTTTCTTTCTTCTGTTGAAATGGTCTTTAGTAATTATAGTTCTGCCAATGAATCTCATTGTTTAATTCTGATTATACCTTTCCCGAAATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCCACCACCCGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTTCTGCTGCTGCTTCCGGCGATGATGATTTACAAAACGTTCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGTACGCAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGGTTCGCGTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTTGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGTCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTTGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGACCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAGTTGGATGCATCTTCTGCATAGTCACATTGAATTTGTTGTATTTGCGGCTTGTCTCCATGGTCCCCTTCACATTTGTAGATCACATTGGTCTGTTCAGAGTGATGCCCCATTAATATGGCTGTTTGGGCACCAACTGGCAGTGCACAGCCACATGGGTGTTGTTTATTGTACTCtattttgattctttatttttaatttatatttttCTGGCGAAACTTGTGAAAGAAACATGCAGTTCACCTAGAAAATTGCTCTTGTGAATCAATGTTGTTTGGTGGAGTATAAAGGAAAAAGGTGCAGATCCTATGAACATGAGATATTTTGTATTTGTAACTTGTATAAGTCCCTTGATGTAACTTATTTTACAATATTTTTTTTCATTTCTATACAAAATATTATAATCGAATGTAGATTTTTCCTTTCCAA
Coding sequences of Glyma.15g001100
>Glyma.15g001100.1 sequence-type=CDS polypeptide=Glyma.15g001100.1.p locus=Glyma.15g001100 ID=Glyma.15g001100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCCACCACCCGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTTCTGCTGCTGCTTCCGGCGATGATGATTTACAAAACGTTCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGTACGCAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGGTTCGCGTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTTGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGTCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTTGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGACCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG

>Glyma.15g001100.2 sequence-type=CDS polypeptide=Glyma.15g001100.2.p locus=Glyma.15g001100 ID=Glyma.15g001100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCCACCACCCGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTTCTGCTGCTGCTTCCGGCGATGATGATTTACAAAACGTTCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGTACGCAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGGTTCGCGTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTTGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGTCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTTGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGACCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG
Predicted protein sequences of Glyma.15g001100
>Glyma.15g001100.1.p sequence-type=predicted peptide transcript=Glyma.15g001100.1 locus=Glyma.15g001100 ID=Glyma.15g001100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLASNGDKEECSESEPILNHHHLHLPPPGESSFSCEIIPISAAASGDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY*

>Glyma.15g001100.2.p sequence-type=predicted peptide transcript=Glyma.15g001100.2 locus=Glyma.15g001100 ID=Glyma.15g001100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLASNGDKEECSESEPILNHHHLHLPPPGESSFSCEIIPISAAASGDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY*






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