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Report for Sequence Feature Glyma.15G152900

Feature Type:gene_model
Chromosome:Gm15
Start:12680146
stop:12681864
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15G152900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09070.1AT soybean gene regulated by cold-2 JGI N/AIEA
GO:0005773GO-cc vacuole EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005789GO-cc endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0032586GO-cc protein storage vacuole membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA

Proteins Associated with Glyma.15G152900
LocusGene SymbolProtein Name
SRC2 SOYBEAN GENE REGULATED BY COLD 2
C2-146 C2 domain containing protein gene 146

Expression Patterns of Glyma.15G152900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15G152900
ParalogEvidenceComments
Glyma.09g045700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15G152900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g152900 Wm82.a4.v1ISS As supplied by JGI
Glyma15g16360 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15G152900
>Glyma.15g152900.1 sequence-type=CDS polypeptide=Glyma.15g152900.1.p locus=Glyma.15g152900 ID=Glyma.15g152900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCATGGAATACAGAACCTTAGAACTCAACATCATATCCGCAAAGGACATCAAGAATGTTAATCTCTTCTCCAAGATGGACGTATACGCCGCCGTTTCGCTCTCCGGTGACCCTCTCCACCCTCAGGGCGCCACCACCCACGTCCACAAAGACGCCGGCAGCAACCCCACGTGGAACTACCCCGTGAAATTCTCTGTCAACGAATCGCTGGCGAAGGAAAATCGTTTATCTCTTGAGATCAAGCTCATCTCCGACCGCACCCTCGGCGACACCGTCATCGGCACCGTCCATGTTCCTCTCAGGGAACTCCTGGATAACCCCGGCGATGACAGCTCCTTCCGCCAAGTCAGTTATCAGGTGATGAAGCAATCAAGAAAATCCAAGGGATCCTTGAATTTCTCCTACAAATTCGGCGAACATGTTCCCGCCCCGGCCGCCAAGACACCCAAAGCGGCCAAGGCGGGACAAGAGCCGGTGATGGCTTATCCTCCTGCTGGGGCGGGATCCAGTTCGATGCCCTATGGTACGCCACACCCTCCCCCGCCGCAGCAATATGCGGCGACGGGATATGGGTATCCACCTCAGCAGGTGCATGGTGGATACCCACCTCAAGCAGCATATGGGTACCCACCTCAGACCGGTTATGGATACCCACAACAGTCGGGTTATGGATATCCACAACAATCCGGATATGGGTACCCACCTCAGGCTCAGAAACCAAAGAAGAACAAATTTGGAATGGGATTGGGAGCAGGATTGCTTGGTGGTGCCTTGGGTGGAATGTTGATCGGAGACATGGTATCTGATGCTGCTGAATATGATGCGGGCTTTGATGATGCTGGTGGATTTGATTTTTAA
Predicted protein sequences of Glyma.15G152900
>Glyma.15g152900.1.p sequence-type=predicted peptide transcript=Glyma.15g152900.1 locus=Glyma.15g152900 ID=Glyma.15g152900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTMEYRTLELNIISAKDIKNVNLFSKMDVYAAVSLSGDPLHPQGATTHVHKDAGSNPTWNYPVKFSVNESLAKENRLSLEIKLISDRTLGDTVIGTVHVPLRELLDNPGDDSSFRQVSYQVMKQSRKSKGSLNFSYKFGEHVPAPAAKTPKAAKAGQEPVMAYPPAGAGSSSMPYGTPHPPPPQQYAATGYGYPPQQVHGGYPPQAAYGYPPQTGYGYPQQSGYGYPQQSGYGYPPQAQKPKKNKFGMGLGAGLLGGALGGMLIGDMVSDAAEYDAGFDDAGGFDF*






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