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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G45110.1 | AT | NPR1-like protein 3 | JGI | N/A | IEA |
| GO:0030162 | GO-bp | regulation of proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0042742 | GO-bp | defense response to bacterium | EnsemblGenomes | N/A | IEA |
| GO:0043161 | GO-bp | proteasome-mediated ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:2000022 | GO-bp | regulation of jasmonic acid mediated signaling pathway | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0019005 | GO-cc | SCF ubiquitin ligase complex | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0031625 | GO-mf | ubiquitin protein ligase binding | EnsemblGenomes | N/A | IEA |
| PF00651 | PFAM | BTB/POZ domain | JGI | N/A | IEA |
| PF11900 | PFAM | Domain of unknown function (DUF3420) | JGI | N/A | IEA |
| PF12313 | PFAM | NPR1/NIM1 like defence protein C terminal | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| NPR1.2.15 | Non-induced pathogenesis-related gene |
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Glyma.15G127200 not represented in the dataset |
Glyma.15G127200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g020800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g127200 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma15g13320 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g127200.1 sequence-type=CDS polypeptide=Glyma.15g127200.1.p locus=Glyma.15g127200 ID=Glyma.15g127200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTATTCAGCCGAACCCTCATCATCTTTGAGCTTTACCTCATCTTCCCATCTATCAAATGGGTCGGTTAGTCACAACATATGCTCTTCTTATGGCTCTGACCCTGGACCTAACCTTGAGGCTCTCAGTTTGAGTAAGCTTAGCTCCAATTTTGAGCAGCTTTTGATTGAAACTGATTGTGATTATAGTGATGCTGACATCGTTGTGGAGGGAATTTCGGTTAGTGTTCATCGATGTATTCTGGCCTCTAGGAGTAAGTTTTTCCATGAATTATTCAAGAGAGAGAAGGGTTCATCAGAAAAAGAAGGGAAATTGAAGTATAACATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATATTCCTTGGCTATGTATATACTGGTAAACTCAAGCCCTCTCCAATGGAAGTGTCTACTTGTGTTGACAGTGTGTGTGCCCATGATGCTTGTAGACCTGCCATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTACATTTTTCAAATACCAGAGTTTGTATCACTTTTCCAGAGACGTCTACTTAACTTTATAGGGAAGGCTCTTGTGGAAGATGTCATCCCAATCCTCACTGTTGCTTTCCATTGTCAATTGAGTCAACTTGTCAATCAATGCATTGATAGGGTGGCCAGATCAGACCTTGACCAGATTTCAATTGACCAAGAGCTTCCAAATGAACTCTCACAAAAAGTTAAATTGCTCCGCCGCAACCCTCAGCGAGATGTTGAAAACGATGCTTCTATAGTGGATGCTTTGTCTCTAAAAAGAATCACTAGAATACACAAGGCATTGGATTCAGATGATGTTGAGCTTGTTAAACTTCTTTTAAATGAATCAGACATTACTTTAGATGAAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGATCCCAAGGTTGTTTCTGAGGTACTTGGTTTGGGACTCGCTAATGTCAATCTTCGAAATTCTAGGGGGTACACAGTGCTTCACATTGCTGCCATGCGTAAAGAGCCTTCCATTATAGTATCCCTACTTACGAAAGGGGCTTGTGCATCAGATTTGACTTTTGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACAAGGCCAAAGGATTATCATGCAAAAACAGAGCAGGGGAAAGAAACAAACAAAGATCGGATATGCATCGATGTTCTTGAAAGAGAAATGTGGAGGAATCCATTGGCTGGGGATGCCTGTATGTCTTCCCATACCATGGCTGATGATCTCCACATGAAACTACTATACCTTGAGAACAGAGTGGCATTTGCAAGACTTTTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCACATGCTGAGACAACATCTGAGTTTGCTGGTCTTTCTGCATCAAACTCAAAAGGTTCAAATGGAAACTTAAGGGAGGTTGATCTCAATGAAACTCCTATAGTTCAAAGTAAAAGACTTTTTTCTAGAATGGAAGCCCTTATGAAAACAGTGGAGATGGGGCGGCGCTACTTCCCGCATTGCTCGGAAGTGTTGGATAAGTTCATGGAGGATGACTTGCCTGACTTGTTTTACCTTGAAAAGGGTACTAATGAAGAGCAGAGAATCAAAAGGACACGTTTCATGGAGCTTAAAGATGACGTCCACAAGGCTTTCAACATGGACAAGGCCGAGTTTAGCCGCTCTGGGATTTCATCTTCATCATCCTCATCATCCCTCAGAGATTCTGTTGTACATTACAAGGCTAGGAAAGTGTAA
>Glyma.15g127200.1.p sequence-type=predicted peptide transcript=Glyma.15g127200.1 locus=Glyma.15g127200 ID=Glyma.15g127200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAYSAEPSSSLSFTSSSHLSNGSVSHNICSSYGSDPGPNLEALSLSKLSSNFEQLLIETDCDYSDADIVVEGISVSVHRCILASRSKFFHELFKREKGSSEKEGKLKYNMSDLLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSTCVDSVCAHDACRPAINFAVELMYASYIFQIPEFVSLFQRRLLNFIGKALVEDVIPILTVAFHCQLSQLVNQCIDRVARSDLDQISIDQELPNELSQKVKLLRRNPQRDVENDASIVDALSLKRITRIHKALDSDDVELVKLLLNESDITLDEANALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMWRNPLAGDACMSSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSASNSKGSNGNLREVDLNETPIVQSKRLFSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTNEEQRIKRTRFMELKDDVHKAFNMDKAEFSRSGISSSSSSSSLRDSVVHYKARKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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