SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.15G051200

Feature Type:gene_model
Chromosome:Gm15
Start:4025824
stop:4027347
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15G051200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64530.1AT xylem NAC domain 1 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PF02365PFAM No apical meristem (NAM) protein JGI N/AIEA

Proteins Associated with Glyma.15G051200
LocusGene SymbolProtein Name
NAC112 NAC Transcription Factor gene 112

Expression Patterns of Glyma.15G051200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15G051200
ParalogEvidenceComments
Glyma.08g181100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15G051200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g051200 Wm82.a4.v1ISS As supplied by JGI
Glyma15g05690 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15G051200
>Glyma.15g051200.2 sequence-type=transcript locus=Glyma.15g051200 ID=Glyma.15g051200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACTTTAAATACCATCCTTTCCAAACCCACCTTCATCCTCCCCTGCCTCTATTTGCTTCAATGGGAGATAACAATGTCAACCTTCCACCCGGGTTTCGATTTTATCCCACAGATGAAGAGCTTGTGGTCCATTTCCTTCACAGAAAGGCATCTCTTTTACCTTGCCACCCAGATGTCATCCCTGATCTTGAGGTCTACCCATATGATCCATGGGAACTTGATGGTAGAGCTTTAGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGAAATGGGTATTGGAAACCAACGGGAATAGAAGAACCAGTGGTTTCAAGCACAAGCAACAAGAGAGTTGGCATGAAGAAATATTTTGTGTTCCATGTGGGAGAAGCCCCTGCTGCTGGAATACAATAAATGGGTGATATGTCGTGTTTATGAGCGCAATGGCGACGATGATAATGGAACAGAGCTGTCGTGCTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATTAGCTTACCAAATTATTAGCTATTAATGCAAGTGATCTAGCTAGCTAGCCGCAGTATACAACTGGATAATTAATTAAAATAATTGATGCTTGTTATATATATATCGTTGATGCTATTAATTTACGAGCCATAGTTAAATCCAGTGTAGGTGGCATTGTAATGATCAGTGAAATGGGTTTTCATAGCAGCCCTTCAAGTGGGGCACTATGTAAAAAATTCATGGCCAAACAATATGTAGTATGACGTTATGCTTTTTCAGATCCCACGTCACTCACTGGCTACCCCCCTCAAATTTCTTTGCCGTTTCTTCGGTATATATGGACACGTACGTCGATAATTGC

>Glyma.15g051200.3 sequence-type=transcript locus=Glyma.15g051200 ID=Glyma.15g051200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACTTTAAATACCATCCTTTCCAAACCCACCTTCATCCTCCCCTGCCTCTATTTGCTTCAATGGGAGATAACAATGTCAACCTTCCACCCGGGTTTCGATTTTATCCCACAGATGAAGAGCTTGTGGTCCATTTCCTTCACAGAAAGGCATCTCTTTTACCTTGCCACCCAGATGTCATCCCTGATCTTGAGGTCTACCCATATGATCCATGGGAACTTGATGGTAGAGCTTTAGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGAAATGGGTATTGGAAACCAACGGGAATAGAAGAACCAGTGGTTTCAAGCACAAGCAACAAGAGAGTTGGCATGAAGAAATATTTTGTGTTCCATGTGGGAGAAGCCCCTGCTGCTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTTCTTCCTCTACCAGATCATCCAAAAGAAAATCACAACCAAAAATAGTCAGTATACATATTTTCATACATAATCAGGAAGCACATCAAACATGAACTCTTCTTATAGTAAGAAATGAGAATTAAAAATATAAACTATTAGCTAATACATAAGTGATTAAAATTAAAAAAATACATATAACTTTTTTAAAATAGCTAGTCGTGTGAACAGTTACCACTGACGTATATTCGAGTTGGAAAACTATTGTACAACACATTGATTTGATTGCTGATTTTATTTTTCCTTTTGTGTTTGATTCAGGAATACAATAAATGGGTGATATGTCGTGTTTATGAGCGCAATGGCGACGATGATAATGGAACAGAGCTGTCGTGCTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATTAGCTTACCAAATTATTAGCTATTAATGCAAGTGATCTAGCTAGCTAGCCGCAGTATACAACTGGATAATTAATTAAAATAATTGATGCTTGTTATATATATATCGTTGATGCTATTAATTTACGAGCCATAGTTAAATCCAGTGTAGGTGGCATTGTAATGATCAGTGAAATGGGTTTTCATAGCAGCCCTTCAAGTGGGGCACTATGTAAAAAATTCATGGCCAAACAATATGTAGTATGACGTTATGCTTTTTCAGATCCCACGTCACTCACTGGCTACCCCCCTCAAATTTCTTTGCCGTTTCTTCGGTATATATGGACACGTACGTCGATAATTGC
Coding sequences of Glyma.15G051200
>Glyma.15g051200.1 sequence-type=CDS polypeptide=Glyma.15g051200.1.p locus=Glyma.15g051200 ID=Glyma.15g051200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGATAACAATGTCAACCTTCCACCCGGGTTTCGATTTTATCCCACAGATGAAGAGCTTGTGGTCCATTTCCTTCACAGAAAGGCATCTCTTTTACCTTGCCACCCAGATGTCATCCCTGATCTTGAGGTCTACCCATATGATCCATGGGAACTTGATGGTAGAGCTTTAGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGAAATGGGTATTGGAAACCAACGGGAATAGAAGAACCAGTGGTTTCAAGCACAAGCAACAAGAGAGTTGGCATGAAGAAATATTTTGTGTTCCATGTGGGAGAAGCCCCTGCTGCTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTTCTTCCTCTACCAGATCATCCAAAAGAAAATCACAACCAAAAATAGAATACAATAAATGGGTGATATGTCGTGTTTATGAGCGCAATGGCGACGATGATAATGGAACAGAGCTGTCGTGCTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATTAGCTTACCAAATTATTAG

>Glyma.15g051200.2 sequence-type=CDS polypeptide=Glyma.15g051200.2.p locus=Glyma.15g051200 ID=Glyma.15g051200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGATAACAATGTCAACCTTCCACCCGGGTTTCGATTTTATCCCACAGATGAAGAGCTTGTGGTCCATTTCCTTCACAGAAAGGCATCTCTTTTACCTTGCCACCCAGATGTCATCCCTGATCTTGAGGTCTACCCATATGATCCATGGGAACTTGATGGTAGAGCTTTAGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGAAATGGGTATTGGAAACCAACGGGAATAGAAGAACCAGTGGTTTCAAGCACAAGCAACAAGAGAGTTGGCATGAAGAAATATTTTGTGTTCCATGTGGGAGAAGCCCCTGCTGCTGGAATACAATAA

>Glyma.15g051200.3 sequence-type=CDS polypeptide=Glyma.15g051200.3.p locus=Glyma.15g051200 ID=Glyma.15g051200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGATAACAATGTCAACCTTCCACCCGGGTTTCGATTTTATCCCACAGATGAAGAGCTTGTGGTCCATTTCCTTCACAGAAAGGCATCTCTTTTACCTTGCCACCCAGATGTCATCCCTGATCTTGAGGTCTACCCATATGATCCATGGGAACTTGATGGTAGAGCTTTAGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGAAATGGGTATTGGAAACCAACGGGAATAGAAGAACCAGTGGTTTCAAGCACAAGCAACAAGAGAGTTGGCATGAAGAAATATTTTGTGTTCCATGTGGGAGAAGCCCCTGCTGCTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTTCTTCCTCTACCAGATCATCCAAAAGAAAATCACAACCAAAAATAGTCAGTATACATATTTTCATACATAATCAGGAAGCACATCAAACATGA
Predicted protein sequences of Glyma.15G051200
>Glyma.15g051200.1.p sequence-type=predicted peptide transcript=Glyma.15g051200.1 locus=Glyma.15g051200 ID=Glyma.15g051200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRTQNRVTGNGYWKPTGIEEPVVSSTSNKRVGMKKYFVFHVGEAPAAGIKTNWIMQEYRLSDSSSSTRSSKRKSQPKIEYNKWVICRVYERNGDDDNGTELSCLDEVFLSLDDDLDEISLPNY*

>Glyma.15g051200.2.p sequence-type=predicted peptide transcript=Glyma.15g051200.2 locus=Glyma.15g051200 ID=Glyma.15g051200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRTQNRVTGNGYWKPTGIEEPVVSSTSNKRVGMKKYFVFHVGEAPAAGIQ*

>Glyma.15g051200.3.p sequence-type=predicted peptide transcript=Glyma.15g051200.3 locus=Glyma.15g051200 ID=Glyma.15g051200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRTQNRVTGNGYWKPTGIEEPVVSSTSNKRVGMKKYFVFHVGEAPAAGIKTNWIMQEYRLSDSSSSTRSSKRKSQPKIVSIHIFIHNQEAHQT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo