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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15730.1 | AT | phospholipase D alpha 1 | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0016042 | GO-bp | lipid catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0046470 | GO-bp | phosphatidylcholine metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004630 | GO-mf | phospholipase D activity | EnsemblGenomes | N/A | IEA |
| GO:0005509 | GO-mf | calcium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0070290 | GO-mf | N-acylphosphatidylethanolamine-specific phospholipase D activity | EnsemblGenomes | N/A | IEA |
| KOG1329 | KOG | Phospholipase D1 | JGI | N/A | IEA |
| PTHR18896 | Panther | PHOSPHOLIPASE D | JGI | N/A | IEA |
| PTHR18896:SF11 | Panther | PHOSPHOLIPASE D | JGI | N/A | IEA |
| PF00168 | PFAM | C2 domain | JGI | N/A | IEA |
| PF00614 | PFAM | Phospholipase D Active site motif | JGI | N/A | IEA |
| PF12357 | PFAM | Phospholipase D C terminal | JGI | N/A | IEA |
| LIPASYN-PWY | SoyCyc9 | phospholipases | Plant Metabolic Network | ISS | |
| PWY-3561 | SoyCyc9 | choline biosynthesis III | Plant Metabolic Network | ISS | |
| PWY-4762 | SoyCyc9 | superpathway of choline biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7039 | SoyCyc9 | phosphatidate metabolism, as a signaling molecule | Plant Metabolic Network | ISS | |
| GN7V-54646 | SoyCyc9-rxn | phospholipase D | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| C2-141 | C2 domain containing protein gene 141 |
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Glyma.15G008500 not represented in the dataset |
Glyma.15G008500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g364900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g008500 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma15g01120 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g008500.1 sequence-type=CDS polypeptide=Glyma.15g008500.1.p locus=Glyma.15g008500 ID=Glyma.15g008500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACACAAATTCTACTGCATGGGACCCTCCAAGTCACAATCTATGAGCTGGATAACCTCAAGGCTGGAAGTGGTGGTAATATTTTAACCAAGTTGGTACATAACATCGAAGAGACTATTGGTATTGGGAAAGGAATTACTAAACTATATGCAACCATTGATCTAGAGAAGGCACGGGTGGGAAGAACCAGAATCATAGAAAAGGAGCACACAAATCCTAAATGGTACGAGTCTTTCCACATTTATTGTGCTCATATGGCATCAAGTATTATATTCACAGTGAAAGATGACAATCCTATTGGTGCAACCTTAATTGGAAGAGCATATAGACAAGGGTGTAAGGTTTCTCTGTACCAAGATGCTCATGTCCCAGACAACTTTGTCCCTAAAATACCACTTGCTGGAGGCCACACTTACCAACCTCATAGATGTTGGGAAGATGTTTTTGATGCAATCAATAACGCACAACACTTGATATACATTACAGGATGGTCTGTTTACACTGAGATTACGTTGGTAAGAGATTCTAGGAGGCCAAAGCGTAGGAGATGCAACACTTGGGTTTTGATGCTTGTTTGGGATGATAGAACTTCGGTTCCTTTGTTAAAAGAAGATGGCTTGATGGCAACTCATGATGAAGACACCGAGAACTACTTCTACGACAGTGAAGTGCACTGTGTTTTATGCCCTCGAAATCCTGACGATGGAGGAAGCGTTGTTCAGGACGTAGAAATTTTCTCCATGTTTAGTCATCATCAGAAAATTGTGGTAGTGGACAGTGCTTTGCCGAATGGAAGATCAGATAAAAGAAGAATTGTGAGTTTTGTTGGGGGTATTGATTTTTGTGATGGAAGATATGACACTCAATTTCACTCACTTTTTAGAACCTTGGGCACTGTACATCATGATGATTTTCATCAGCCTAACTTTTCACATACTTCAATAAAGAAAGGTGGTCCAAGGGAACCATGGCATGACATTCACTCTCGGCTTGAAGGGCCTATTGCATGGGATGTTTTGTTCAACTTTGAGCAAAGATGGAAGAAGCAAGGTGGAAAGGACTTACTTATTCCACCTAAAGATCTTGAAAATGTCATTATTCCCCCATCAGTAGTAACTTACCCTGAAGACCATGAGGCATGGAACGTTCAGTTATTTAGATCCATTGATGGTGGAGCTGCTTTTGGGTTCCCAGAGACTCCTGAGGAAGCAGCTAGATCTGGACTCATTAGTGGGAAGGATAATATAATAGACCGTGGCATTCAAGATGCTTATATTAAAGCCATTCGACGTGCCAAAAATTTCATCTATATTGAGAATCAGTACTTTCTTGGAAGTTGTTATGCTTGGAGTGCTGATGGGATTAAGCCTGAAGACATTGGTGCTTTGCATCTGATACCGAGGGAGCTTTCACTTAAGATTGTTAGCAAGATTGAAGCTTGGGAAAGGTTCAGTGTTTATATTGTGGTTCCAATGTGGCCAGAGGGTTACCCAGAAAAAGGAACGGTTCAAGCAATATTGGATTGGCAGAGGAGAACAATGGATATGATGTACAAGGATGTTGTTGGAGCACTAAAAGGCAAGGGTAATGAGGAAGATCCTCTCAACTATTTGACATTCTTCTGCCTCGTTAATAGGGAGCTGAAGAAAGAAGGAGAGTATGTGCCCCCAGAAAGACCAGATCCTCATACAGATTATATGAGAGCACAAGTGTCCCGACGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCGAGAGACTCTGAGGTGGCGATGGCTGCTTATCAACCCTATCATTTGGCTACCAAGCAGCCAGCAAGGGGACAAATCCACGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCTTGCTTCATGACTCCTTCCTCCATCCTGAGAGTGAAGAATGTATTGAGAAGCAAGACCTTCCTGGCCATCTGCTTCGCTACCCTGTTGCGATTTCCAGCCAAGGAAATGTGACACAACTGCAAGCATTTGAATTCTTCCCTGACACAAAAGCTCCTATTCTTGGGGCTAAATCTGACTACATTCCACCTATCCTTACTACTTAA
>Glyma.15g008500.1.p sequence-type=predicted peptide transcript=Glyma.15g008500.1 locus=Glyma.15g008500 ID=Glyma.15g008500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTQILLHGTLQVTIYELDNLKAGSGGNILTKLVHNIEETIGIGKGITKLYATIDLEKARVGRTRIIEKEHTNPKWYESFHIYCAHMASSIIFTVKDDNPIGATLIGRAYRQGCKVSLYQDAHVPDNFVPKIPLAGGHTYQPHRCWEDVFDAINNAQHLIYITGWSVYTEITLVRDSRRPKRRRCNTWVLMLVWDDRTSVPLLKEDGLMATHDEDTENYFYDSEVHCVLCPRNPDDGGSVVQDVEIFSMFSHHQKIVVVDSALPNGRSDKRRIVSFVGGIDFCDGRYDTQFHSLFRTLGTVHHDDFHQPNFSHTSIKKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDLLIPPKDLENVIIPPSVVTYPEDHEAWNVQLFRSIDGGAAFGFPETPEEAARSGLISGKDNIIDRGIQDAYIKAIRRAKNFIYIENQYFLGSCYAWSADGIKPEDIGALHLIPRELSLKIVSKIEAWERFSVYIVVPMWPEGYPEKGTVQAILDWQRRTMDMMYKDVVGALKGKGNEEDPLNYLTFFCLVNRELKKEGEYVPPERPDPHTDYMRAQVSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEVAMAAYQPYHLATKQPARGQIHGFRMSLWYEHLGLLHDSFLHPESEECIEKQDLPGHLLRYPVAISSQGNVTQLQAFEFFPDTKAPILGAKSDYIPPILTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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