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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65930.1 | AT | cytosolic NADP+-dependent isocitrate dehydrogenase | JGI | N/A | IEA |
| GO:0006097 | GO-bp | glyoxylate cycle | EnsemblGenomes | N/A | IEA |
| GO:0006099 | GO-bp | tricarboxylic acid cycle | EnsemblGenomes | N/A | IEA |
| GO:0006102 | GO-bp | isocitrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0004450 | GO-mf | isocitrate dehydrogenase (NADP+) activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| KOG1526 | KOG | NADP-dependent isocitrate dehydrogenase | JGI | N/A | IEA |
| PTHR11822 | Panther | NADP-SPECIFIC ISOCITRATE DEHYDROGENASE | JGI | N/A | IEA |
| PF00180 | PFAM | Isocitrate/isopropylmalate dehydrogenase | JGI | N/A | IEA |
| PWY-6549 | SoyCyc9 | L-glutamine biosynthesis III | Plant Metabolic Network | ISS | |
| GN7V-59138 | SoyCyc9-rxn | oxalosuccinate decarboxylase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| IDH | isocitrate dehydrogenase |
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Glyma.14g211000 not represented in the dataset |
Glyma.14g211000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g241200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma14g39160 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.14g211000.1 sequence-type=CDS polypeptide=Glyma.14g211000.1.p locus=Glyma.14g211000 ID=Glyma.14g211000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGCGTTCCAGAAGATCAAGGTCGCCAACCCCATCGTCGAGATGGACGGAGATGAAATGACTAGGGTTATCTGGAAGTCAATCAAGGACAAGCTCATTTTGCCCTTCTTGGAGTTGGACATCAAGTATTATGACTTAGGCCTTCCTTACCGTGATGAGACCGATGATAAAGTTACAATTGAAAGTGCGGAAGCAACTCTCAAGTATAATGTGGCAATTAAGTGCGCAACTATTACTCCAGATGAAGCTCGTGTGAAGGAGTTTGGTCTGAAGTCAATGTGGAAGAGTCCAAATGGGACAATTAGGAACATTTTGAATGGAACTGTCTTCAGAGAACCAATTCTTTGCAAAAACATTCCCCGCCTTGTTCCTGGTTGGACAAAGGCAATATGCATTGGAAGACATGCGTTTGGTGATCAATATCGGGCGACTGACACAGTAATTAAAGGAGCTGGAAAGCTGAAGCTGGTGTTTGTTCCAGAAGGCCAGGGTGAGGAGACTGAATTCGAGGTTTTTAACTTCACTGGTGAAGGGGGTGTTTCATTGGCTATGTACAATACTGATGAGTCTATTCGTTCTTTTGCTGAGGCCTCTATGGCAACTGCTTTAGAGAAAAAGTGGCCACTTTATCTTAGCACCAAAAATACAATTCTGAAGAAATATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTATGAGGCAAGCTGGAAATCAAAGTTTGAGGCTGCTGGTATATGGTATGAGCATCGACTCATTGATGATATGGTGGCGTATGCACTTAAGAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTATGATGGAGATGTCCAGAGTGATTTCTTAGCTCAAGGTTTTGGATCACTGGGTTTGATGACATCTGTATTGGTTTGCCCTGATGGAAAGACTATTGAAGCAGAAGCAGCCCACGGCACAGTTACCCGCCATTTTAGGGTTCATCAGAAGGGAGGCGAAACCAGCACAAATAGCATAGCATCCATCTTTGCCTGGACAAGAGGGCTAGCCCACAGGGCAAAACTGGATGACAATGCTAAACTCTTGGATTTCACTGAAAAGCTAGAGGCAGCTTGCATTGGAGTAGTAGAGGCTGGGAAGATGACCAAGGATTTGGCACTTATTCTTCATGGATCCAAGCTGTCAAGGGAGCATTATTTGAACACAGAGGAATTCATCGATGCCGTGGCAGCCGAGCTTAGTGCGAGGCTTTCTGCATAG
>Glyma.14g211000.1.p sequence-type=predicted peptide transcript=Glyma.14g211000.1 locus=Glyma.14g211000 ID=Glyma.14g211000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAAFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLAMYNTDESIRSFAEASMATALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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