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Report for Sequence Feature Glyma.14g205500

Feature Type:gene_model
Chromosome:Gm14
Start:47061905
stop:47067563
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g205500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20920.1AT eukaryotic translation initiation factor 2 beta subunit JGI N/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation JGI N/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity JGI N/AIEA
KOG2768 KOG Translation initiation factor 2, beta subunit (eIF-2beta) JGI N/AIEA
PTHR23001Panther EUKARYOTIC TRANSLATION INITIATION FACTOR JGI N/AIEA
PTHR23001:SF3Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 2 JGI N/AIEA
PF01873PFAM Domain found in IF2B/IF5 JGI N/AIEA

Expression Patterns of Glyma.14g205500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g205500
ParalogEvidenceComments
Glyma.02g236700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g205500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g38600 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g205500
>Glyma.14g205500.1 sequence-type=CDS polypeptide=Glyma.14g205500.1.p locus=Glyma.14g205500 ID=Glyma.14g205500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAAGAAGAAAATTACAATTGTAGATCCTGCTGATGAACCTGTGGAGAAATTGGCTGAGAAGACAGAAAACCTCTCAGTTTCCGAGGGGGTTGAGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCTGTTGAAATGGGTAACTTGAATGATGAGAGTGGAGATGCAATTGAAGATTTGGATGATCACCCTGAAGATGATGAAGGAGAAATGGTTGTTCCCCAGGCTCGTTATCCTTGGGAAGGGAGTGATCGTAATTATGAATATGAGGAGCTGCTTGGCAGGGTGTTTAACATTCTACGTGAAAATAATCCTGAACTTGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGGTACAAGTGGCTCCCTTGATGGACAGCAGAGATTGGTTGTAAAGGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGAAGGAACACAGGGACATAG
Predicted protein sequences of Glyma.14g205500
>Glyma.14g205500.1.p sequence-type=predicted peptide transcript=Glyma.14g205500.1 locus=Glyma.14g205500 ID=Glyma.14g205500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADEPVEKLAEKTENLSVSEGVETAFTGLKKKKKKPVEMGNLNDESGDAIEDLDDHPEDDEGEMVVPQARYPWEGSDRNYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT*






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