SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G47340.1 | AT | glutamine-dependent asparagine synthase 1 | JGI | N/A | IEA |
| GO:0006529 | GO-bp | asparagine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006529 | GO-bp | asparagine biosynthetic process | JGI | N/A | IEA |
| GO:0006541 | GO-bp | glutamine metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009646 | GO-bp | response to absence of light | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0004066 | GO-mf | asparagine synthase (glutamine-hydrolyzing) activity | EnsemblGenomes | N/A | IEA |
| GO:0004066 | GO-mf | asparagine synthase (glutamine-hydrolyzing) activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0042803 | GO-mf | protein homodimerization activity | EnsemblGenomes | N/A | IEA |
| KOG0571 | KOG | Asparagine synthase (glutamine-hydrolyzing) | JGI | N/A | IEA |
| PTHR11772 | Panther | ASPARAGINE SYNTHETASE | JGI | N/A | IEA |
| PF00733 | PFAM | Asparagine synthase | JGI | N/A | IEA |
| ASPARAGINE-BIOSYNTHESIS | SoyCyc9 | L-asparagine biosynthesis I | Plant Metabolic Network | ISS | |
| ASPARAGINESYN-PWY | SoyCyc9 | L-asparagine biosynthesis II | Plant Metabolic Network | ISS | |
| GLUTAMINDEG-PWY | SoyCyc9 | L-glutamine degradation I | Plant Metabolic Network | ISS | |
| PWY0-1325 | SoyCyc9 | superpathway of L-asparagine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-60301 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| AS2 | asparagine synthetase 2 |
|
Glyma.14g195000 not represented in the dataset |
Glyma.14g195000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g228100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma14g37440 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.14g195000.1 sequence-type=CDS polypeptide=Glyma.14g195000.1.p locus=Glyma.14g195000 ID=Glyma.14g195000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTGTGGTATTCTTGCTGTTCTTGGTTGTTCTGATGACTCTCGAGCCAAAAGGGTCCGCGTGCTTGAGCTCTCTCGCAGATTGAAGCACCGTGGCCCTGACTGGAGTGGGCTCCATCAACATGGTGACTGCTTTTTGGCACATCAACGGTTAGCCATAGTTGATCCTGCTTCTGGGGATCAACCTCTCTTTAACGAGGACAAATCCGTCATTGTTACGGTAAATGGAGAGATTTACAACCATGAAGAGCTCAGGAAACAGCTGCCTAATCACAACTTCCGAACTGGAAGTGATTGTGATGTTATTGCACACCTGTACGAGGAACATGGAGAAGACTTTGTGGACATGCTGGATGGTATCTTCTCATTTGTTCTACTGGACACCCGTGACAACAGTTTTATAGTGGCTCGGGATGCTATTGGGGTCACTTCCTTGTACATTGGATGGGGGTTAGATGGCTCTGTTTGGATTTCATCAGAAATGAAAGGCCTGAATGATGATTGTGAACACTTTGAGTGTTTTCCACCTGGTCACTTGTACTCTAGCAAAGAAAGAGGGTTCCGCAGATGGTACAATCCTCCTTGGTTCTCTGAGGCTATTCCATCTGCCCCTTATGATCCTCTTGTTTTAAGACACGCCTTTGAGCAGGCAGTCATAAAAAGGTTGATGACTGATGTGCCTTTTGGTGTTCTACTCTCTGGAGGTTTGGACTCTTCTTTGGTTGCATCCATCACTTCTCGTTACTTGGCCAACACAAAGGCTGCTGAGCAGTGGGGATCAAAGTTACATTCATTCTGTGTAGGCCTTGAGGGCTCACCAGATTTGAAGGCTGCAAAAGAGGTTGCTGACTATCTAGGCACTGTCCACCATGAGTTTACCTTCACTGTTCAGGATGGAATAGATGCCATTGAAGATGTTATCTACCATATTGAAACATATGATGTGACTACAATTAGAGCAAGCACACCTATGTTTCTCATGTCTCGGAAGATTAAATCACTTGGTGTCAAATGGGTTATCTCAGGAGAAGGATCTGATGAGATCTTTGGAGGGTATTTGTACTTCCACAAGGCACCCAACAAGGAGGAGTTCCACAGAGAAACATGCCGCAAGATCAAAGCACTTCACCAATATGATTGCTTGCGAGCCAATAAATCAACATTTGCTTGGGGTCTAGAAGCCCGTGTACCATTTTTGGACAAGGCGTTTATCAATGCTGCAATGAGTATTGACCCTGAGTGGAAGATGATAAAAAGAGATGAAGGACGAATTGAGAAGTGGATTCTGAGGAGAGCCTTTGATGATGAAGAGCATCCTTATCTGCCAAAGCACATTTTATACAGGCAGAAAGAACAATTCAGTGATGGAGTTGGCTATAGTTGGATTGATGGCCTTAAGGCCCATGCTGCAAAACATGTGACTGAAAAAATGATGCTTAATGCTGGTAACATTTACCCCCACAACACCCCAAAAACCAAGGAAGCATATTACTACAGAATGATCTTTGAGAGGTTCTTCCCTCAGAACTCAGCTAGGCTCACTGTTCCTGGAGGAGCAAGTGTTGCATGTAGCACAGCCAAAGCTGTTGAGTGGGATGCTGCTTGGTCTAACAACCTTGATCCCTCTGGTAGAGCAGCACTTGGAGTGCACATTTCAGCCTATGAAAACCAGAACAACAAGGGTGTAGAAATTGAGAAGATAATACCTATGGATGCTGCTCCCCTTGGTGTTGCCATCCAGGGCTAA
>Glyma.14g195000.1.p sequence-type=predicted peptide transcript=Glyma.14g195000.1 locus=Glyma.14g195000 ID=Glyma.14g195000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MCGILAVLGCSDDSRAKRVRVLELSRRLKHRGPDWSGLHQHGDCFLAHQRLAIVDPASGDQPLFNEDKSVIVTVNGEIYNHEELRKQLPNHNFRTGSDCDVIAHLYEEHGEDFVDMLDGIFSFVLLDTRDNSFIVARDAIGVTSLYIGWGLDGSVWISSEMKGLNDDCEHFECFPPGHLYSSKERGFRRWYNPPWFSEAIPSAPYDPLVLRHAFEQAVIKRLMTDVPFGVLLSGGLDSSLVASITSRYLANTKAAEQWGSKLHSFCVGLEGSPDLKAAKEVADYLGTVHHEFTFTVQDGIDAIEDVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKWVISGEGSDEIFGGYLYFHKAPNKEEFHRETCRKIKALHQYDCLRANKSTFAWGLEARVPFLDKAFINAAMSIDPEWKMIKRDEGRIEKWILRRAFDDEEHPYLPKHILYRQKEQFSDGVGYSWIDGLKAHAAKHVTEKMMLNAGNIYPHNTPKTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAAWSNNLDPSGRAALGVHISAYENQNNKGVEIEKIIPMDAAPLGVAIQG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
