Glyma.14g194300

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.14g194300

Feature Type:	gene_model
Chromosome:	Gm14
Start:	45935668
stop:	45939896
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.14g194300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05580.1	AT	fatty acid desaturase 8	JGI	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016717	GO-mf	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	EnsemblGenomes	N/A	IEA
GO:0016717	GO-mf	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	JGI	N/A	IEA
PTHR19353	Panther	FATTY ACID DESATURASE 2	JGI	N/A	IEA
PTHR19353:SF7	Panther		JGI	N/A	IEA
PF00487	PFAM	Fatty acid desaturase	JGI	N/A	IEA
PF11960	PFAM	Domain of unknown function (DUF3474)	JGI	N/A	IEA
PWY-5997	SoyCyc9	α-linolenate biosynthesis I (plants and red algae)	Plant Metabolic Network		ISS
PWY-762	SoyCyc9	phospholipid desaturation	Plant Metabolic Network		ISS
PWY-782	SoyCyc9	glycolipid desaturation	Plant Metabolic Network		ISS
GN7V-49191	SoyCyc9-rxn	1-18:2-2-trans-16:1-phosphatidylglycerol desaturase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.14g194300

Locus	Gene Symbol	Protein Name
	FAD3a	omega-3-fatty acid desaturase 3 gene 1
	FAD3A	microsomal omega-3-fatty acid desaturase
	FAD3A	fatty acid desaturase

Expression Patterns of Glyma.14g194300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.14g194300

Paralog	Evidence	Comments
Glyma.02g227200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g194300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma14g37350	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.14g194300

Limit To All Plant Sequences

>Glyma.14g194300.2 sequence-type=transcript locus=Glyma.14g194300 ID=Glyma.14g194300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGGTGTTATATAAATGCACTACCCCATAATTGAATTTTTCAAAGATTTCATTCTTCCTCTTCTAGGTTATTACGCACCACCCACCACGTATCCCTGAAAAGAGAGAAAAACACACTAAGCCAAAGCCAAAGCAGCAATGGTTAAAGACACAAAGCCTTTAGCCTATGCTGCTAATAATGGATACCAAAAGGAAGCTTTTGATCCCAGTGCTCCTCCACCGTTTAAGATTGCAGAAATCAGAGTTGCAATACCAAAACATTGCTGGGTCAAGAATCCATGGAGATCCCTCAGTTATGTTCTCAGGGATGTGCTTGTAATTGCTGCATTGATGGCTGCTGCAAGTCACTTCAACAACTGGCTTCTCTGGCTAATCTATTGGCCCATTCAAGGAACAATGTTCTGGGCTCTGTTTGTTCTTGGACATGATTGTGGCCATGGAAGCTTTTCAGACAGCCCTTTTCTAAATAGCCTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGGAGAATTAGCCACAGAACTCACCATCAaaatcatggacacattgagaaggatgaatcctgggttccaTTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGTTCTCAAGAAGCCCCGGAAAGGAAGGTTCTCACTTCAATCCCTACAGCAATCTGTTCCCACCCAGTGAGAGAAAGGGAATAGCAATATCAACACTGTGTTGGGTTACCATGTTTTCTATGCTTATCTATCTCTCCTTCATAACTAGTCCAGTTCTATTGCTCAAGCTCTATGGAATTCCATATTGGATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCATCATCAGAAACTGCCTTGGTATCGCGGCAAGGTAACAAAAATAAATAGAAAATAGAATGGAGTTATTTAAGAGGTGGTCTCACAACTGTGGATCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCGACACAAGCAGCAAAATCAGTTCTTGGAGAGTATTACCGTGAGCCAGAAAGATCTGCACCATTACCATTTCATCTAATAAAGTATTTAATTCAGAGTATGAGACAAGACCACTTCGTAAGTGACACTGGAGATGTGGTTTATTATCAGACTGATTCTCTGCACCTTCACTCGCACCGAGACTGAGTTTCAATTTTTGGGTTATTTATTGGATTCTAGCTACTCAAATTACTTTTTTTTTAATGTTACGTTTTTGGAGTTTTAACGTTTTCTGAACAACTTGCAAATTACATGCATAGAGAGACAGGAATTCATAGTGGGCCTCAATGGAATATTTATTTGAAATTAGTAAGGTGGTAATTAATAAATATTGAATTGTCAGTTTCATTTGTAATGATTTCTACCACTTG

Coding sequences of Glyma.14g194300

Limit To All Plant Sequences

>Glyma.14g194300.1 sequence-type=CDS polypeptide=Glyma.14g194300.1.p locus=Glyma.14g194300 ID=Glyma.14g194300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTAAAGACACAAAGCCTTTAGCCTATGCTGCTAATAATGGATACCAAAAGGAAGCTTTTGATCCCAGTGCTCCTCCACCGTTTAAGATTGCAGAAATCAGAGTTGCAATACCAAAACATTGCTGGGTCAAGAATCCATGGAGATCCCTCAGTTATGTTCTCAGGGATGTGCTTGTAATTGCTGCATTGATGGCTGCTGCAAGTCACTTCAACAACTGGCTTCTCTGGCTAATCTATTGGCCCATTCAAGGAACAATGTTCTGGGCTCTGTTTGTTCTTGGACATGATTGTGGCCATGGAAGCTTTTCAGACAGCCCTTTTCTAAATAGCCTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGGAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCATTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGTTCTCAAGAAGCCCCGGAAAGGAAGGTTCTCACTTCAATCCCTACAGCAATCTGTTCCCACCCAGTGAGAGAAAGGGAATAGCAATATCAACACTGTGTTGGGTTACCATGTTTTCTATGCTTATCTATCTCTCCTTCATAACTAGTCCAGTTCTATTGCTCAAGCTCTATGGAATTCCATATTGGATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCATCATCAGAAACTGCCTTGGTATCGCGGCAAGGAATGGAGTTATTTAAGAGGTGGTCTCACAACTGTGGATCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCGACACAAGCAGCAAAATCAGTTCTTGGAGAGTATTACCGTGAGCCAGAAAGATCTGCACCATTACCATTTCATCTAATAAAGTATTTAATTCAGAGTATGAGACAAGACCACTTCGTAAGTGACACTGGAGATGTGGTTTATTATCAGACTGATTCTCTGCACCTTCACTCGCACCGAGACTGA

>Glyma.14g194300.2 sequence-type=CDS polypeptide=Glyma.14g194300.2.p locus=Glyma.14g194300 ID=Glyma.14g194300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTAAAGACACAAAGCCTTTAGCCTATGCTGCTAATAATGGATACCAAAAGGAAGCTTTTGATCCCAGTGCTCCTCCACCGTTTAAGATTGCAGAAATCAGAGTTGCAATACCAAAACATTGCTGGGTCAAGAATCCATGGAGATCCCTCAGTTATGTTCTCAGGGATGTGCTTGTAATTGCTGCATTGATGGCTGCTGCAAGTCACTTCAACAACTGGCTTCTCTGGCTAATCTATTGGCCCATTCAAGGAACAATGTTCTGGGCTCTGTTTGTTCTTGGACATGATTGTGGCCATGGAAGCTTTTCAGACAGCCCTTTTCTAAATAGCCTGGTGGGACACATCTTGCATTCCTCAATTCTTGTGCCATACCATGGATGGAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCATTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGTTCTCAAGAAGCCCCGGAAAGGAAGGTTCTCACTTCAATCCCTACAGCAATCTGTTCCCACCCAGTGAGAGAAAGGGAATAGCAATATCAACACTGTGTTGGGTTACCATGTTTTCTATGCTTATCTATCTCTCCTTCATAACTAGTCCAGTTCTATTGCTCAAGCTCTATGGAATTCCATATTGGATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCATCATCAGAAACTGCCTTGGTATCGCGGCAAGGTAACAAAAATAAATAGAAAATAG

Predicted protein sequences of Glyma.14g194300

Limit To All Plant Sequences

>Glyma.14g194300.1.p sequence-type=predicted peptide transcript=Glyma.14g194300.1 locus=Glyma.14g194300 ID=Glyma.14g194300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKDTKPLAYAANNGYQKEAFDPSAPPPFKIAEIRVAIPKHCWVKNPWRSLSYVLRDVLVIAALMAAASHFNNWLLWLIYWPIQGTMFWALFVLGHDCGHGSFSDSPFLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKIYKNLDNMTRLVRFTVPFPLFVYPIYLFSRSPGKEGSHFNPYSNLFPPSERKGIAISTLCWVTMFSMLIYLSFITSPVLLLKLYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATQAAKSVLGEYYREPERSAPLPFHLIKYLIQSMRQDHFVSDTGDVVYYQTDSLHLHSHRD*

>Glyma.14g194300.2.p sequence-type=predicted peptide transcript=Glyma.14g194300.2 locus=Glyma.14g194300 ID=Glyma.14g194300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKDTKPLAYAANNGYQKEAFDPSAPPPFKIAEIRVAIPKHCWVKNPWRSLSYVLRDVLVIAALMAAASHFNNWLLWLIYWPIQGTMFWALFVLGHDCGHGSFSDSPFLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKIYKNLDNMTRLVRFTVPFPLFVYPIYLFSRSPGKEGSHFNPYSNLFPPSERKGIAISTLCWVTMFSMLIYLSFITSPVLLLKLYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKVTKINRK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain