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Report for Sequence Feature Glyma.14g179100

Feature Type:gene_model
Chromosome:Gm14
Start:44035687
stop:44039901
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g179100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14600.1AT Target SNARE coiled-coil domain protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG3385 KOG V-SNARE JGI N/AIEA
PTHR12791Panther GOLGI SNARE BET1-RELATED JGI N/AIEA
PTHR12791:SF17Panther JGI N/AIEA
PF05739PFAM SNARE domain JGI N/AIEA

Expression Patterns of Glyma.14g179100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g179100 not represented in the dataset
Glyma.14g179100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g179100
ParalogEvidenceComments
Glyma.02g211500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g179100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g35710 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g179100
>Glyma.14g179100.1 sequence-type=CDS polypeptide=Glyma.14g179100.1.p locus=Glyma.14g179100 ID=Glyma.14g179100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGCTAATTCCCACAGATTGGGTTCTTCCTACGGCGGCGCTGCCCCTTACCGATCAAGAGATGGGCTTAGCACCCGTCCCGTTGGTGCCTCGGAGGAGATCCAATTGCGAATTGATCCCCTGGACTTGGACGATGAGATCACCGGTCTTCATCGCCAAGTTAGAAGGTTGAAACATGTTGCTGAGGAGATAGGAACAGAAGTGAAGTATCAGAAAACTTTTCTTGAAGAACTGCAAATGACAATGATAAAGGCTCAAGCTGGAGTGAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCCAAAGTGGTTCAAACCATATTATTCATGTTATTATTTTTGCTTTAGTCTGTTTCTTTGTAGTATACCTTTGGTCCAAGATGTTCAGAAAGTGA
Predicted protein sequences of Glyma.14g179100
>Glyma.14g179100.1.p sequence-type=predicted peptide transcript=Glyma.14g179100.1 locus=Glyma.14g179100 ID=Glyma.14g179100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAANSHRLGSSYGGAAPYRSRDGLSTRPVGASEEIQLRIDPLDLDDEITGLHRQVRRLKHVAEEIGTEVKYQKTFLEELQMTMIKAQAGVKNNLRRLNKSIVQSGSNHIIHVIIFALVCFFVVYLWSKMFRK*






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