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Report for Sequence Feature Glyma.14g178300

Feature Type:gene_model
Chromosome:Gm14
Start:43874679
stop:43879470
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g178300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02820.1AT zinc knuckle (CCHC-type) family protein JGI N/AIEA
GO:0000076GO-bp DNA replication checkpoint EnsemblGenomesN/AIEA
GO:0006974GO-bp cellular response to DNA damage stimulus EnsemblGenomesN/AIEA
GO:0007049GO-bp cell cycle EnsemblGenomesN/AIEA
GO:0033262GO-bp regulation of nuclear cell cycle DNA replication EnsemblGenomesN/AIEA
GO:0043111GO-bp replication fork arrest EnsemblGenomesN/AIEA
GO:0048478GO-bp replication fork protection EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0031298GO-cc replication fork protection complex EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
PTHR13220Panther TIMELESS INTERACTING-RELATED JGI N/AIEA
PTHR13220:SF1Panther JGI N/AIEA
PF00098PFAM Zinc knuckle JGI N/AIEA

Expression Patterns of Glyma.14g178300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g178300 not represented in the dataset
Glyma.14g178300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.14g178300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g35601 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g178300
>Glyma.14g178300.1 sequence-type=CDS polypeptide=Glyma.14g178300.1.p locus=Glyma.14g178300 ID=Glyma.14g178300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCTCTTTGTAACACTCAACCTCTCCTCTCACTCACGCCTAAGGTTCTTCGAGTCCTTCTGTTCGTCGTTGTCGCATTGCGCTCGAGACCCTAGAAGAGAAAAAATGGAGGGAACAAGAGCAGGAACCGCAACAGGGTCTTACAAGTGTGGCAAACCTGGTCACTGGTTACGAGATTGCCCTTTCTCCGCTCCCAATTCCAATTTCAATCTCAATCCAAACCCTAACTCTATCACCGCCACCACTCCCAATCCCAATACTCCAAATCGTTCTTCGTCTTCTTTCAAGCCCAAATCCGCCACCAAAAAGCCCAACATGCTCCCTCGAACAAAACCCAAACTCACACCGGAGCTTCTTCTCTCCGACGACGACCTCGGTTACGCCCTTCGCTATTTCCCTCGCAAGTTCAAATACTGTGGTCGTGGCCACGAGTTTGTTCACAAAGTAGAGAAAGTTGCTGCTACAAGGCGTGGAAAGTCTATGGATATTCTTCAGGTGCTAGTGGAAAGTGGAACAAGTGAGACTCTGCTCATATCTTATGCTTATTTCATATTTCTGTACAGAGCTATCTATGTAAAGTCTATTCTGCGTGTGTTTTTTCCTCTAATTTTGTTGGTTTGGCACATCAAGAAAGACACACGAGGAGCTATGAGCTGTCTCCATTGCCTATGGACATGTGCTTCTAAGGTCTATAAACTACCATTCCCATGA
Predicted protein sequences of Glyma.14g178300
>Glyma.14g178300.1.p sequence-type=predicted peptide transcript=Glyma.14g178300.1 locus=Glyma.14g178300 ID=Glyma.14g178300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLFVTLNLSSHSRLRFFESFCSSLSHCARDPRREKMEGTRAGTATGSYKCGKPGHWLRDCPFSAPNSNFNLNPNPNSITATTPNPNTPNRSSSSFKPKSATKKPNMLPRTKPKLTPELLLSDDDLGYALRYFPRKFKYCGRGHEFVHKVEKVAATRRGKSMDILQVLVESGTSETLLISYAYFIFLYRAIYVKSILRVFFPLILLVWHIKKDTRGAMSCLHCLWTCASKVYKLPFP*






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