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Report for Sequence Feature Glyma.14g175900

Feature Type:gene_model
Chromosome:Gm14
Start:43451179
stop:43452544
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g175900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22100.1AT RNA cyclase family protein JGI N/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
GO:0042254GO-bp ribosome biogenesis EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
KOG3980 KOG RNA 3'-terminal phosphate cyclase JGI N/AIEA
PTHR11096Panther RNA 3' TERMINAL PHOSPHATE CYCLASE JGI N/AIEA
PF01137PFAM RNA 3'-terminal phosphate cyclase JGI N/AIEA
PF05189PFAM RNA 3'-terminal phosphate cyclase (RTC), insert domain JGI N/AIEA

Expression Patterns of Glyma.14g175900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.14g175900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g35280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g175900
>Glyma.14g175900.1 sequence-type=CDS polypeptide=Glyma.14g175900.1.p locus=Glyma.14g175900 ID=Glyma.14g175900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAAATGACTTACAAGAGGCTAAAGGGAAGCCAGAGCTTCAGTCAACTCCTTCTCTCTACTCTCTCCTCCACTCCCATTCTCATCGAGGACATTCGCGCCGATGAGACATGGCCTGGTACCAAATTAAAGTACAAACCGGGAACTATCATGGGTGGCAGACAACACAGTGCACACGATTGTGGCGTCTCATGGTCCATTGGTTATTTTTTGGAGCCACGCATTATGTTGTGTTTGTTTGCCAAACAGCCCCTTACTATCAGGCTCAAAGGAATTACAAATGATTCTAAAGATCCATCTGTTGATACCTTCAAGTCAACAACTTTACCTATATTAAAGCGCTTTGGAGTTCCATCTGAAGGCTTGGAGATTAAAGTAGAGAGTCATGGATTACCTCCCAATGGTGGTAGTGAAGTTCTTTTGTCTGTTCCTGTTGTTCAGAGTCTAACGTTTGAATATGGCATGATTAAAGTTGCCCGTGGAATCATAAATCCGCTAGTTTCTGATGTGCACATTTTCTCTGATCACAGATCAGGTCCTGAGGCTGGAAAATATGGGATTTCACTGGTTGTGGAAACTACGTCTGGTTGTTTCATTTTTATAGACACTGTTGTTTCTCAAGTAAGGGATAACGATACTTGTGGCCTTGCAGATGATGCGAGAAGAGACTTGATGCCTCCAAATGATAATGGTGTGGGGATTGCTAGTGCATTACTAGGGGAGATAGCTCAAAGTGGAGTGTAG
Predicted protein sequences of Glyma.14g175900
>Glyma.14g175900.1.p sequence-type=predicted peptide transcript=Glyma.14g175900.1 locus=Glyma.14g175900 ID=Glyma.14g175900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKMTYKRLKGSQSFSQLLLSTLSSTPILIEDIRADETWPGTKLKYKPGTIMGGRQHSAHDCGVSWSIGYFLEPRIMLCLFAKQPLTIRLKGITNDSKDPSVDTFKSTTLPILKRFGVPSEGLEIKVESHGLPPNGGSEVLLSVPVVQSLTFEYGMIKVARGIINPLVSDVHIFSDHRSGPEAGKYGISLVVETTSGCFIFIDTVVSQVRDNDTCGLADDARRDLMPPNDNGVGIASALLGEIAQSGV*






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