Report for Sequence Feature Glyma.14g171600
Feature Type: gene_model
Chromosome: Gm14
Start: 42465896
stop: 42473299
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.14g171600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G36050.2 AT
Endoplasmic reticulum vesicle transporter protein
JGI N/A IEA
GO:0016020 GO-cc
membrane
EnsemblGenomes N/A IEA
GO:0016021 GO-cc
integral component of membrane
EnsemblGenomes N/A IEA
KOG2667
KOG
COPII vesicle protein
JGI N/A IEA
PTHR10984 Panther
ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN
JGI N/A IEA
PF07970 PFAM
Endoplasmic reticulum vesicle transporter
JGI N/A IEA
Expression Patterns of Glyma.14g171600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.14g171600
Paralog Evidence Comments
Glyma.13g088200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.14g171600 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma14g34600 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.14g171600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.14g171600.1 sequence-type=CDS polypeptide=Glyma.14g171600.1.p locus=Glyma.14g171600 ID=Glyma.14g171600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATAGCATAATGAGCAAGCTCCGCAACCTCGACGCGTACCCTAAAATCAACGAGGATTTCTACAGCCGCACGCTCTCCGGCGGTGTCATCACGCTCGCTTCCTCCATCCTCATGCTCTTGCTCTTCTTCTCCGAGCTCCGGTTGTATCTTCATGCGGTGACCGAGACCAAGCTTGTCGTAGACACTTCCAGAGCCGAAACGCTGCGTATCAATTTTGATGTTACGTTTCCTGCGCTTCCATGTTCCATACTCAGTCTTGATGCAATGGACATCAGCGGAGAGCAGCATCTAGATGTTAAGCACGATATAATCAAGAAGAGATTAGACTCTCACGGCAATGTGATAGAAACAAGGCAAGAAGGAATTGGTGCTCCCAAGATTGAAAAGCCCTTGCAAAGGCACGGAGGCAGGCTTGAGCACAATGAGACTTATTGTGGTTCCTGTTATGGTGCTGAAGAGTCAGATGATGATTGTTGTAATTCCTGTGAGGATGTTCGTGAAGCATACCGTAAGAAAGGTTGGGCACTTTCAAATCCTGATTTAATTGACCAGTGCAAAAGAGAAGGATTCTTACAAAGAATCAAGGATGAAGAAGGTGAAGGATGCAATGTGTATGGTTTCTTGGAAGTAAATAAGGTTGCAGGGAACTTTCATTTTGCTCCTGGGAAAAGCTTTCAGCAATCTGGTGTACATGTACATGACCTACTGGCTTTTCAAAAGGATTCTTTTAATTTAAGTCACCACATCAACAGATTAGCTTTCGGAGAGTATTTCCCTGGTGTTGTTAATCCTCTTGACAACGTGCATTGGACACAAGAAACACCAAGTGGTATGTATCAGTATTTTATTAAGGTTGTGCCTACAGTATACACTGACGTGAGTGGGCATACTATCCAGTCAAACCAGTTCTCTGTGACAGAACACTTCAGGACTGGAGACGTGGGTCGTCTGCAGTCCCTTCCCGGGGTTTTCTTTTTCTATGACCTCTCTCCAATTAAGGTTACTTTTACAGAAGAAAATGTCTCATTCTTACATTTTCTTACTAATGTTTGTGCCATAGTTGGAGGTATTTTCACCGTTTCTGGAATACTAGATTCATTCATCTATCACGGTCAAAGGGCTATCAAGAAGAAGATGGAGCTTGGTAAATTTAACTGA
Predicted protein sequences of Glyma.14g171600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.14g171600.1.p sequence-type=predicted peptide transcript=Glyma.14g171600.1 locus=Glyma.14g171600 ID=Glyma.14g171600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSIMSKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFFSELRLYLHAVTETKLVVDTSRAETLRINFDVTFPALPCSILSLDAMDISGEQHLDVKHDIIKKRLDSHGNVIETRQEGIGAPKIEKPLQRHGGRLEHNETYCGSCYGAEESDDDCCNSCEDVREAYRKKGWALSNPDLIDQCKREGFLQRIKDEEGEGCNVYGFLEVNKVAGNFHFAPGKSFQQSGVHVHDLLAFQKDSFNLSHHINRLAFGEYFPGVVNPLDNVHWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRTGDVGRLQSLPGVFFFYDLSPIKVTFTEENVSFLHFLTNVCAIVGGIFTVSGILDSFIYHGQRAIKKKMELGKFN*