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Report for Sequence Feature Glyma.14g171200

Feature Type:gene_model
Chromosome:Gm14
Start:42387905
stop:42389129
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g171200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75760.1AT ER lumen protein retaining receptor family protein JGI N/AIEA
GO:0006621GO-bp protein retention in ER lumen EnsemblGenomesN/AIEA
GO:0006621GO-bp protein retention in ER lumen JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0046923GO-mf ER retention sequence binding EnsemblGenomesN/AIEA
GO:0046923GO-mf ER retention sequence binding JGI N/AIEA
PTHR10585Panther ER LUMEN PROTEIN RETAINING RECEPTOR JGI N/AIEA
PTHR10585:SF10Panther ER LUMEN PROTEIN RETAINING RECEPTOR FAMILY PROTEIN-RELATED JGI N/AIEA
PF00810PFAM ER lumen protein retaining receptor JGI N/AIEA

Expression Patterns of Glyma.14g171200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g171200 not represented in the dataset
Glyma.14g171200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.14g171200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g34545 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g171200
>Glyma.14g171200.1 sequence-type=CDS polypeptide=Glyma.14g171200.1.p locus=Glyma.14g171200 ID=Glyma.14g171200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGTTTCAAATTGAAATCTAGTTATATAGATGATAAGGACAACCTTGCAATATACTATGTGGTAATACCTTGTGTTGTGTTGTCCTTGTTAATTCATCCAATAACCTGGCATCATCCACTTAATAGGATTCTCTGGGCATTTTGTGTTTATCTTGAAGCTGTTTCTGTTCTCCCTCAGCTACAAGTCATGCAGAACACTAAGATTGTTGAACCATTCACAGCACACTATGTTTTTTTCTCTGGGAGTTGCAAGTTTCTTGAGTTGTGCACATTGGGTCCTCCAGGTTTGTCAAAATTTGAACTCCTCTAA
Predicted protein sequences of Glyma.14g171200
>Glyma.14g171200.1.p sequence-type=predicted peptide transcript=Glyma.14g171200.1 locus=Glyma.14g171200 ID=Glyma.14g171200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRFKLKSSYIDDKDNLAIYYVVIPCVVLSLLIHPITWHHPLNRILWAFCVYLEAVSVLPQLQVMQNTKIVEPFTAHYVFFSGSCKFLELCTLGPPGLSKFELL*






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