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Report for Sequence Feature Glyma.14g163000

Feature Type:gene_model
Chromosome:Gm14
Start:39888056
stop:39894979
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g163000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77680.1AT Ribonuclease II/R family protein JGI N/AIEA
GO:0000291GO-bp nuclear-transcribed mRNA catabolic process, exonucleolytic EnsemblGenomesN/AIEA
GO:0006364GO-bp rRNA processing EnsemblGenomesN/AIEA
GO:0006401GO-bp RNA catabolic process EnsemblGenomesN/AIEA
GO:0034427GO-bp nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0090503GO-bp RNA phosphodiester bond hydrolysis, exonucleolytic EnsemblGenomesN/AIEA
GO:1990074GO-bp polyuridylation-dependent mRNA catabolic process EnsemblGenomesN/AIEA
GO:0000178GO-cc exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0000932GO-cc P-body EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000175GO-mf 3'-5'-exoribonuclease activity EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0004518GO-mf nuclease activity EnsemblGenomesN/AIEA
GO:0004527GO-mf exonuclease activity EnsemblGenomesN/AIEA
GO:0004540GO-mf ribonuclease activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2102 KOG Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3 JGI N/AIEA
PTHR23355Panther RIBONUCLEASE JGI N/AIEA
PTHR23355:SF10Panther JGI N/AIEA
PF00773PFAM RNB domain JGI N/AIEA

Expression Patterns of Glyma.14g163000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g163000
ParalogEvidenceComments
Glyma.13g082100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g163000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g33170 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g163000
>Glyma.14g163000.1 sequence-type=CDS polypeptide=Glyma.14g163000.1.p locus=Glyma.14g163000 ID=Glyma.14g163000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGCCACTGTTGAAGGATCCATGACCGAGAGGTTTGACGACGGTGAAAAGGAGAAGAAGAAGAAGCGCCGATCCAATCGTCGATCCAAGCAAAATCCTCCATCATCTTCAGCGTCTGAAGTTAATGAGGCCCAGGGGGTGTCACCAGAATCAGGGAAAATTGGAACACCTACTCATGCTTCTCCATCCTTTGGCAGTTCATTGAAGCAGGTCAATGTGTGTTCTCCTAATGAGCAAGGATTATCCAAATCATCAAATGTCGCTTTTAATTCGATGCCTCCCATGCATATCAATGAGCAAGTGGAACCTGGTGATTTGCGAATTGTGCCAATGTATGATGGAGGAATTGATTCAAAATCATTTTCTGAGCCCACTGGTTGCAGAGGGTCATCTGTAATTAATAAAAACAAGGACTCAGTCCCTTGCGGTCAAATTGGGCTTTCTGGGCAGAAAAATTATTTTAGTCCACACTGGTCTGTAGAGGCTGTTGAGAAGGCATTGGAGAAGGGTGATATTTTTAAAGCTCTCCTTCATGTCAATGCTCACAATAGACTTGAGGCATACTGCAAAATTGATGGAATGTCAACGGATGTTTTCATTGGTGGGATTCCAGCCCAGAATAGAGCTGTGCAAGGTGATATTGTTGCAGTCAAGTTTGATCCCTTGCCATTGTGGACAAAAATGAAAGGACCAAATGGGTCTTGTAACAACACTGCAACACTGGAAGGTTGCAACCTTCTTACAGAAGATAAAGAAGTGGGTGGTAATATTTGTAATGGGAAAGCTAAAGTAGGTGCTGAGTATGAGTCTGCTCATTGCAGAAGCTATCCTGGTCAAAACAAGGAGGATGCTGATCAAAACTCCTCATATAGAAGTTATCCTTTGCCTGAAAAAACAATGGTTTATGATGATATTACCTCTCAGGGTTCTACTAACCATTTAGATCTGCATGGAATGGCCAGCCATGACAGCATTAATGGTCATCACTGTGCTGCTCCTGATTCCATAAAGAACAATTCTTGTAGTGGGCAGAGCAATGCATTAGAAAAGATGTGTTTGTTGGTTAACTCTTTCCCGTCTAAAAGACCAACTGGCAGGGTGGTTGCTATTATGGAGAGATCTCCACGTCGAGAGGGTATTGTTGGTCACATTAATGTGAAGCAGTGGGTTTCTTTCAGGGACACAGGCAAAAAGGATTTGAAGAAGAATAAGAATTTGATTTCTGAGCATGAATACATCCAACTGACACCAACTGATCCAAAGTTTCCAAATATGATGCTTCTTGTTAGAAAGTTGCCAAACTGCATTAAGAAAAGGATGAAAAGTGGTGATGTGACAATCGAAATGGATCTGGTAGCTGCACAAATTGATGACTGGGTTGAAGAAAGTCCTTTTCCCGAGGCTCACATTTTGCGTGTTTTTGGACGAGGTGGTGAAGTTCAGACCCAATTAGATGCAATTTTGTTTCAGAATGCAATCTGTTTGTCTGAGTTTCTACCTGAAGCTCTGTCCTGTCTGCCATGTGTTCCTTGGGAGGTTCCACTGAAAGAAATTCAAAGTAGAATAGATCTTAGAAATTTGTGCATATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCACTGTCAATTGAGGAGTTGCCTAATGGAAATTATAGAGTAGGTGTCCACATTGCTGATGTGTCATATTTTGTTCTCCCTGACACACCCTTGGATAGCGAGGCTCAGTTTAGGTCAACAAGTGTCTATATGTTGCAAAGAAAGTTACCTATGCTGCCTGCATTATTGTCAGAGAATATTGGTTCACTTAGTCCTGGAGGGGATCGACTTGCAGTTTCCATGCTCCTGGATATAAATCTTGCAGGAGATGTTGTAGACCGTTGGATTGGTCGTACTGTCATACATTCTTGTTGTAAGCTTTCATATGAACATGCTCAGGACATCATTGACAAGGCTTTTGATTTTGAGGGTTCAAATTTCAGTGAAGATGGCTATCCTAGAGTGTATGGCCATTTTGAATGGCCTGATGTTATTAAGTCTTTGAAGAGTCTTTATGAAATTTCAAATGTCTTGAAACAGAAGAGGTTTACTGATGGGGCTCTACGGCTTGAAAACCCCAAAGTTGTTATCTTGTTTGATGAAAATGGAGTTCCTTACGATAGTATGCTTTCTGAAAGGAAAGAATCAAATTTTCTTGTTGAGGAATATATGCTTTTGGCCAATAGGATTGCAGCGGAAGTCATATGTAGAGCTTATCCTGATGGTGCATTGTTGAGGAGGCATCCTGAACCTAATATGCGGAAGCTGAGAGAGTTTATGGCATTTTGTCAGAAACATGGTTTAGAATTGAACACATCTTCATCTGGTCAGTTCCATTGGTCATTAGAGCAGATCAGGGAAAAGCTCAAGGGTGATCCTGTGCTTTACAATATACTTATTTCTTTTGCTACAAGGCCAATGCAATTGGCATCTTACTTCTGTAGTGGAGATTTAAAGGACAGTGAAAATGAATGGGGTCATTATGCTTTGGCTGTCCCATTTTACACTCATTTCACATCACCTCTGCGTCGGTATCCGGATATTATTGTTCACCGGACACTACTTGCTACTATAGAGGCTGAGGAATTATATATGAAGCATCAGAAGGCTTTGCAGGGTTACAAGGAAGTGAAAGTGCAAAAAAGATGTTTCACAGACATTAGTTTTGATAAAATTGCTGCAGAATCCATGGAAGGTAGGGAAGCACTATCAGCCGCAGCTGTGAAGCATAGTGTTCCATGTGCAGAAACACTTGCAGATATTGCTGCTTATTGCAATGAGAGAAAGCTAGCTAGTAGAAACGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCCTGAAGAAAAAGGAGGTTTTATTGTCAGAAGCAAGAATACTGGGACTAGGCCCAAGATTCATGTCAATTTATATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGAAGTTGAAGGTTTGACTGTGGAGTGGCTTGAGACAACATCCACTTTGGTGCTTAGCATGTCTACTAGTAAGTGTGCATTTAGGAGGGGCTGCCCTAACAAGTGGAGGGCATTTGAAGAAGTTGCATTGCTTACTTGTCCATATAACCTGGATTTTACCATGGATAATTCTAACCAGAGTGAAGTAATGAAAGTGGATGATAGTATAACTGCCATGGACAGGGAGGAGCCCATTTCAAGATCAGACTTATCGGAAACTGAAATTGACCCTGCATTTTTCCCACTCACAGTGTGTCTTCTTTCAACAATTCCAGTAGCACTTCATGCTGTTGGTGGTGATGATGGCCCCCTTGATATTGGAGTGAGGCTGTACATGAGCTCCTATTTTCGGTGA
Predicted protein sequences of Glyma.14g163000
>Glyma.14g163000.1.p sequence-type=predicted peptide transcript=Glyma.14g163000.1 locus=Glyma.14g163000 ID=Glyma.14g163000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRATVEGSMTERFDDGEKEKKKKRRSNRRSKQNPPSSSASEVNEAQGVSPESGKIGTPTHASPSFGSSLKQVNVCSPNEQGLSKSSNVAFNSMPPMHINEQVEPGDLRIVPMYDGGIDSKSFSEPTGCRGSSVINKNKDSVPCGQIGLSGQKNYFSPHWSVEAVEKALEKGDIFKALLHVNAHNRLEAYCKIDGMSTDVFIGGIPAQNRAVQGDIVAVKFDPLPLWTKMKGPNGSCNNTATLEGCNLLTEDKEVGGNICNGKAKVGAEYESAHCRSYPGQNKEDADQNSSYRSYPLPEKTMVYDDITSQGSTNHLDLHGMASHDSINGHHCAAPDSIKNNSCSGQSNALEKMCLLVNSFPSKRPTGRVVAIMERSPRREGIVGHINVKQWVSFRDTGKKDLKKNKNLISEHEYIQLTPTDPKFPNMMLLVRKLPNCIKKRMKSGDVTIEMDLVAAQIDDWVEESPFPEAHILRVFGRGGEVQTQLDAILFQNAICLSEFLPEALSCLPCVPWEVPLKEIQSRIDLRNLCIFTIDPSTATDLDDALSIEELPNGNYRVGVHIADVSYFVLPDTPLDSEAQFRSTSVYMLQRKLPMLPALLSENIGSLSPGGDRLAVSMLLDINLAGDVVDRWIGRTVIHSCCKLSYEHAQDIIDKAFDFEGSNFSEDGYPRVYGHFEWPDVIKSLKSLYEISNVLKQKRFTDGALRLENPKVVILFDENGVPYDSMLSERKESNFLVEEYMLLANRIAAEVICRAYPDGALLRRHPEPNMRKLREFMAFCQKHGLELNTSSSGQFHWSLEQIREKLKGDPVLYNILISFATRPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEELYMKHQKALQGYKEVKVQKRCFTDISFDKIAAESMEGREALSAAAVKHSVPCAETLADIAAYCNERKLASRNVKDACDKLYIWFLLKKKEVLLSEARILGLGPRFMSIYIQKLAIERRIYYDEVEGLTVEWLETTSTLVLSMSTSKCAFRRGCPNKWRAFEEVALLTCPYNLDFTMDNSNQSEVMKVDDSITAMDREEPISRSDLSETEIDPAFFPLTVCLLSTIPVALHAVGGDDGPLDIGVRLYMSSYFR*






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