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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24400.1 | AT | NagB/RpiA/CoA transferase-like superfamily protein | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0006098 | GO-bp | pentose-phosphate shunt | EnsemblGenomes | N/A | IEA |
| GO:0009051 | GO-bp | pentose-phosphate shunt, oxidative branch | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0017057 | GO-mf | 6-phosphogluconolactonase activity | EnsemblGenomes | N/A | IEA |
| KOG3147 | KOG | 6-phosphogluconolactonase - like protein | JGI | N/A | IEA |
| PTHR11054 | Panther | 6-PHOSPHOGLUCONOLACTONASE | JGI | N/A | IEA |
| PF01182 | PFAM | Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase | JGI | N/A | IEA |
| OXIDATIVEPENT-PWY | SoyCyc9 | pentose phosphate pathway (oxidative branch) I | Plant Metabolic Network | ISS | |
| PENTOSE-P-PWY | SoyCyc9 | pentose phosphate pathway | Plant Metabolic Network | ISS | |
| GN7V-59532 | SoyCyc9-rxn | 6-phosphogluconolactonase | Plant Metabolic Network | ISS |
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Glyma.14g161800 not represented in the dataset |
Glyma.14g161800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma14g32190 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.14g161800.1 sequence-type=CDS polypeptide=Glyma.14g161800.1.p locus=Glyma.14g161800 ID=Glyma.14g161800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCACTTCCACAATTTTCTCCCTGTCATGCACTCCCAAAAGCACATTGCTTTCCAAACCAAAGCAACACACACTATCCCCTTCCATGTCATTGCTGTCACCGGAAGTGGTACAAAAAAGCCTCTACCAGCCTCTAAGAAACAATGTATCTCCAATTTCTATGAAGCCTAAGAGAAATCATGTGGGTGGCTTAGTGAAGGCATCAATGAATAACAAGAACGTGGAGGTATTCTCCAAGGAACATCTTGCTGTGTCTCTGGCCAAATATGTTGCTGATCTATCCAATAAATTCATCAAAGAAAGAGGATACTTCGCTATCGCTCTTTCCGCTGGGTCTATCAAGTACCTCAGGAAGCTAGTGGAACCTCACTATTCTAACACTATCCAATGGTCTAAGTGGCATATATTTTGGGTAGATGAGAAAGTGGTGCCAAAGACTCACGTGGATAGCAACTACAAGCTTGCTTACGATGGATTTATCTCCAAGGTGCCAATTCCTCCATACAATGTCAACACAATTGATGATGCCTTGCCAGCTGATGGAGCAGCTGATGTTTATGAGACAACTCTCAAACGCTTGGTTGCAAGTAATGTGGTCGCAAAATCACTAGCCACAGGATTTCCAAAATTTGATCTTGTGTTGTTAGACATGGGTCCTGATGGGCATGTGGCATCTCTGTTCCCAGAGCACCCTACACTGAATGAGACCAAAAAATGGGTTACCTTTCTCAAGAATGCACCCACCGCACCACCAGAGAGGATCACCTTTACCTTGCCAGTGATCAATGCTTCTTCAAACATAGCAATGGTGGTGACTGGTGCTGGTAAAGCAGATGCAGTCTACTCTGCACTGGAGGAAGCTCCTAGTGATTATAAGCTCCCTGCTCAATTGGTTTCACCTAGAGAAGGAGAGTTGAAATGGTTCTTAGACAAGGGAGCTGCATCAAGGTTATGGTAG
>Glyma.14g161800.1.p sequence-type=predicted peptide transcript=Glyma.14g161800.1 locus=Glyma.14g161800 ID=Glyma.14g161800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATSTIFSLSCTPKSTLLSKPKQHTLSPSMSLLSPEVVQKSLYQPLRNNVSPISMKPKRNHVGGLVKASMNNKNVEVFSKEHLAVSLAKYVADLSNKFIKERGYFAIALSAGSIKYLRKLVEPHYSNTIQWSKWHIFWVDEKVVPKTHVDSNYKLAYDGFISKVPIPPYNVNTIDDALPADGAADVYETTLKRLVASNVVAKSLATGFPKFDLVLLDMGPDGHVASLFPEHPTLNETKKWVTFLKNAPTAPPERITFTLPVINASSNIAMVVTGAGKADAVYSALEEAPSDYKLPAQLVSPREGELKWFLDKGAASRLW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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