SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.14g155900

Feature Type:gene_model
Chromosome:Gm14
Start:33901493
stop:33911289
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g155900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21580.1AT Zinc finger C-x8-C-x5-C-x3-H type family protein JGI N/AIEA
GO:0006378GO-bp mRNA polyadenylation EnsemblGenomesN/AIEA
GO:0016973GO-bp poly(A)+ mRNA export from nucleus EnsemblGenomesN/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0005847GO-cc mRNA cleavage and polyadenylation specificity factor complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0004521GO-mf endoribonuclease activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PTHR23102Panther ZINC FINGER (CLIPPER)-RELATED JGI N/AIEA
PTHR23102:SF13Panther ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 JGI N/AIEA

Expression Patterns of Glyma.14g155900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g155900
ParalogEvidenceComments
Glyma.13g034600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g155900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g24710 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g155900
>Glyma.14g155900.1 sequence-type=CDS polypeptide=Glyma.14g155900.1.p locus=Glyma.14g155900 ID=Glyma.14g155900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCAACACCACTTCCTCCACCACCACCACTACCATCCCCAAGAACACCGTAATCGATACACCTCCCTCACACCTCAATCCCACCACCACCATAACAATCTCCCTCCGCCGCCCCCAAATCCTCCTCCGCCTCTTTCCTACCACCGCACACCCCAACACTACACCCCTCCTACACCCCAACCCCAACCCCAACAACAGCAATTCCCTTATACACCCCTCCCACATCGCCCTCTCGAAGAAGAACCCCAACCCCAACCCCAACGCCATATCCCCTACGACCTTCTCCCTCGCCGCACCACCACCCTCCCCTGGAACCCTAACCCTAGAATTCCTGATGATTTCGATCGCGATTTCCACCTCCACCGCCCTCTCCCGCCGCCACCCCTGATCGAATCCCACCGCTACGACCCCGACCGGCACCACCACCACCGCGTCGTCGTCGATCCATATGAGCAGAACCCTAGGGAGCCCCTTGCGTGGGGGGGCGGCGGCTACCACGCGCCGGGCCAGGGCGACGTGGACCCCACGCCCTACGTCCGCGTGTACACCATGGAATCCGATGCCGATGCGGCGGGGAGAACAACCTCCAAGAGATGGGTAATGAGTGATAGAGATAGAGGAAGAGAGATGCTCGAGTCTTCTTCTAGTTTAGTGAGTAATAGTGTTAACAATGAGAAATATTATCATGGCTCTGAGAGCAATATGATGGGTAGGTATAGTAGAGGGAATAGTAGAGAGTGTGGTCATACCCATGAATTTGCACGCACTCCTCCGAAGAAACAGGTGCAGAAGAAGAGTGCTCTTCTTAGGATTCAGACGGTTAAACCTAATAATAATCATAGGAACCGCGACAATCGCGAGGTTGAGCCGTTACGGTACCCAGGTTATGGTTCTGAGTGTAGCAATGGTTTTTACAGGGGAAAGGAGCAGTATTTGGGTCATGGGGTGAAGGGGGATGAGAGGGAAGAGAGAGAGGGGAGTCCTGTTGAGATTGATATTTCTTTTGAGTCCAATTCGCTGGTGGCAAAGGCGAAGGCGATTGTGGCGCCACCTTCGAGTTTGGTGTCGGTTCCTGATTTGAATGTGATGCCAATTGCAGATTCGGATTTGGTTTATGGGGGGAGGAGTAAAAGGGTTTCGGGCACTGATGGTGATTATTCTGGTTTGCAATTGCAGCAACCGGTTAGAATGTCTTCGGTTGTTGTTGTGGATTTAAATAGGTCGCCTTGCAAAGGGAATGATAGCTTGGGCTCGAGGAAGGAGGTTATGGGGTCGAAGAAGAAGAATGTTGATGATGGTTCTTCCCGGTCTAGTGCCAGGGAGGCCGATGGTTCCCGTGGGAAAAAGGAGGTGCCAAATTCTGTTAAGGTTGGCAATGTTGGTTCTGGTAAATTGACCTTGAAGGTTGTCAAGAAGAAGAAAATTGTTAAGAGAGTGGTGAAGAAAGGTACTGCAAGTTCTAAGTCATCTGTGTCGAATTCACTACCAGCTAAAACACTTCCTGGAACTGTGAAAGCAGAGAGTGTTGCATGTATTTCATTGACTGCCTCTGGTCCTGAGAAAATTGAAGCTAATTTGGATGAGAAAAGCAACACTGTTGATGAGGTGGCTAAGCCTGACTGTTTGCACCCTTTACCAAAGGAAGGGAATGTATTGAAAGAAGAAGCAGAGGTAGGCTTATTGCAGCCGAGTTTGGGGCCACATTCCGGGTCACAAGAGTGTAAGAGTGACAAAGATTCTGATATTGGGAAAGTATCCAGGTTTGAAAAAGATGGAAACATTTCAAATTCTCTATCTTGTGCTTCTAGTAGTGAAGATAAAAAGAGTGATTCTGATTGTTTAGATGCAAATGATTCTGTCCATGATAATGCAAATACATCTGACTGTTTAGATGCAAATAATTCTGTGCCAAATACTGTCAAGGTTACTAAATCATTAAGTGGAAGTAATATTTCAGTAGTCACTAACATGGATTATGGTAATAAGCAATTATGTCAGAATGAAGTGTCTCTATCACCTGGGAAATATTCAAATGCAGGATCCCCACAGAATAGGAATCTTGTAGATGCAGGGGATGAACTTTTGAAAAGCAGTGTTATTTCATGTTCAGGAAAAACTAGGATTCAGGATGGTCTGGATTGCCTCCAACATGCCAGTGCACTAAAGCACAGTTCTGATAATGGATCATCTAATTTAGAAGATAGTACTAGTGTTGACTTTTCTGGTATTATGCATGATGCTGGAAAGCAGGTGTCCCCTGGTCATGTCATCATATCCCCTGAGAATTGTGAGACAGAAAAAGCATTCCCCAATTATAATGTTTCAGCTGGATCTGGTGAAGGGGACACAAATATGATAAAAAAGAGAAAAGATAGAACACACTTAAAATATTTGAGTTCAGAGATGGAGTGCTTATCTCCAGACTATGTAAATTCAGATAGGCTTGCAAATAATGTGGATGGAGGCTCAAGTCTGTTGTTGAAAGATCCATCTCCTTCAGAAGTTTTAGCGCAACCTGTTCAAAGCTTAGATTTTAACTCACTATCCGGCCTGGATGGGGTTACTGCTTTACATGTTGTAAATAATGACAATGATAATGCAAATGAGGTTTCACCAGCTTCTAAAAGGAAAAAAGTCACAGCTAACCCATATTTCACAAAATGTCAATCGGAATTCTGTGCTGTGATTGTGCCTTCCCCCACATCTGAAGCTCCTGTGAGTTTCAGTGATAACCAAGAACATCAGAAAGAAGTTGTTTTTGCAAGCATGGGTATGAGTATTCTGTCTACTGCTCAGTCAATACTTTATTCAGAGAATATTACTAAAATGTCTGAAAATATTTTGGCTGGAGGATCTTTTGAGTCTATTGATGCAGATAAGGAAACTATGAGTTCTGAGCATTTGGAATTGCAGCACTCAGATATAGTCTCTTTTTCACCAAGTGAGGACGTGGCATTTCCAAATGTTCAGTTGTCATCATTGGAAGGTGAGTGCAAAGAAAACATTACTCCAATTGTGCCTACAAGTAATATTCAAACAGATGTTTTGGCTGTGGGAATTATAGCGGGGCAAAAGACTGATTTACAGGCTGTTGAAGAAAATTACCAGTATAGAGAGCATGTGCAAAGGTCACCAAGAGCTGATATGGAACCTAATGATCACAATATGAAGAATGATTTGCTTGCTCGGCAGAACCTTATGTCTTGTCCAGCCAGTAGTGATGAAGTCACTACAAGTAATTTGAATAACGAAGTGATTGAGGATGTACCTGATGCATTATCAGATATGTTTTCTCAAGGGATGGCATCTGAAGTACCGGATCAAAGGGTTTTAGAATTTACAGCAATCAACGATGAAAATATTTGTGGGGTTGAAGAAAATCCAGATAACAACATATCTATTGTTGGACATGGTTCTGACTTAAATACTTCATCAATACAGCAGACTAGAAAAAATATGAAGTCAGGTCATGCAATCGAACATAGTAACCTGATCACAAAGAAGACAATGTCAGAACCATCCCAAGTTTCTTCCAGAGTTACAACTCAGGCTTTAAATTCATATCGTTTTGGGTTGAGTGGGACCAAAAACCAGTCAGGTAGTGTCATTCCCAAAACTTTTCCAGGTCATTCTTTCACCTTTTCAAAGGCATCTGCCTCTTCACCTCATGTATCAAAGCCTCGAACTTGGCTTCGTACAGGTAATATTCCTCCCACTTCTGTACTTAGAATCAAGCCTTCAGTAGAAACAGTTCCTCCCAAAAGGCCAATTCTAGAAACAAAAGGGAACTTTCAAAATACCTCTTATGTTCGTAAAGGTAACAGTCTTGTAAGGAAACCTACTCCAGTTTCCACTCTACCTCAAATCTCCTCTGTTAATCAGACATCTTCTTTGGGCATAGATGAAATACCAAAAAGCATTAAATCTGGAAGGAGGGCTGATGGGACAGATAAACCAATGTACTTGAAAACAGGAGCAATAAATGCTCCACAGCAGAGAACACCTCCACTACCAATTGACACCAAATTAGAGGAAAATAGATCTTCCTCATTGGTAGAACCTCCTTCTGGTGGTTGCTGTGAAAATGCATCAGATGTTAGGAAATTTATAGAAACTGATAATATTGCACCAAATTCTTCTGAAGATGCACTGAAGCATTGTGAAACTCCAGAAAATCAATCTGGTCCATCTGATAATGGGGAGAGCCAAGGTGAAGCAAACGATGGAAATGTTTTTCCTTTGAATACAAAGAGAATAGTATATATAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCTTATGATGTTTCTGTCTCTACTGATGACAATCTCCAAACTGCCTTCTCTGATGGCTACTACAAGAGAAGAAAAAATCAATTGGTTAGGACTACAATCGAAAGCCATATCAACCAGACAGTTGCAATGCCCAATAACACGGCAAATTCTGATGGACAAGGAACTAGTAATGCTCTTTGCAACAGGAGGTTTAGTAAGAAGCGGACACATAAGGTTGGTAGGAGTTCATTTAAACGTTCAAGAGCCTCATTAGTGTGGACACTCTGTAGCAAAAATTCTTCTGAAAATGACAGGGACTCACGACATTATCAAAGGGCTTTACCTCTATTGTTTCCATGGAAAAGAGCAGCATTTGCTTCAAGCTTGAATAACAGTTCCTTATCTGCAATCAGCAAAAAATTGCTTCAGTTGAGAAAGAGGGATACAGTTTACACTAGGTCAATCCACGGGTTTTCACTTCGGAAATCCAGAGTTTTAGGTGTTGGGGGGTGTAGTTTAAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCTAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTAGAGAGGAAGAAGAGAGAGCAGAAAAATGCAGTTTGCATCAGTTCTCTGTCAAAGAGAGAGCGTATATTTCGCATTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGAGAACACTTCAGAGGATTTCAGACGATGAATCCCTGTCCTCTGCATCTACCTGTTCAGGTTTGGCTTCCAAAAGAGCTTACATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCGAATTGGCAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGATTGGCACGAAAGCAGAAGTATTGTCAGTTTTTTACTAGATTTGGGAAATGTAACAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCCTCAAAAATCGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACACATAAGGTTATTCCAGAGAGAATGCCAGATTGTTCTTACTTCTTGCAAGGCTTATGCTCAAATAGAAATTGTCCATATAGACATGTCAATGTGAACCCCAAGGCATCTATTTGTGAAGGATTTCTCAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGAAACAGGAACCTGTACTCAAGGAACCAAATGTAAACTTCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGGAAGAGAACTGCATATCAAAACAACAGTAGAGGGCGTTATTTTGGTTCTATTCCTGCTAATGTTTCTGAATCTGGGATGATGTTGGCTCCAAAGCGACATAGACAGAGTGGTGAACTTGAAGAGGAACTTTCTGACTACATCAGCCTAGATGATGTGAATGAAGAAGTTTTAGACACGGTCGATCAATCATTTGAGCCAGCAACTTTCTGTGACAATGACTCCTTGGATTTACAGTTGGACGATTTTGATGAACTTATTAAACCAGTTCTTCTGTTGAAAACAAAGTTCACAATGCAATCACCTCAGTTTAGTAGCCTCCAAGCTTTTAGGCAAGTGGCGGAGAGTTAG
Predicted protein sequences of Glyma.14g155900
>Glyma.14g155900.1.p sequence-type=predicted peptide transcript=Glyma.14g155900.1 locus=Glyma.14g155900 ID=Glyma.14g155900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDQHHFLHHHHYHPQEHRNRYTSLTPQSHHHHNNLPPPPPNPPPPLSYHRTPQHYTPPTPQPQPQQQQFPYTPLPHRPLEEEPQPQPQRHIPYDLLPRRTTTLPWNPNPRIPDDFDRDFHLHRPLPPPPLIESHRYDPDRHHHHRVVVDPYEQNPREPLAWGGGGYHAPGQGDVDPTPYVRVYTMESDADAAGRTTSKRWVMSDRDRGREMLESSSSLVSNSVNNEKYYHGSESNMMGRYSRGNSRECGHTHEFARTPPKKQVQKKSALLRIQTVKPNNNHRNRDNREVEPLRYPGYGSECSNGFYRGKEQYLGHGVKGDEREEREGSPVEIDISFESNSLVAKAKAIVAPPSSLVSVPDLNVMPIADSDLVYGGRSKRVSGTDGDYSGLQLQQPVRMSSVVVVDLNRSPCKGNDSLGSRKEVMGSKKKNVDDGSSRSSAREADGSRGKKEVPNSVKVGNVGSGKLTLKVVKKKKIVKRVVKKGTASSKSSVSNSLPAKTLPGTVKAESVACISLTASGPEKIEANLDEKSNTVDEVAKPDCLHPLPKEGNVLKEEAEVGLLQPSLGPHSGSQECKSDKDSDIGKVSRFEKDGNISNSLSCASSSEDKKSDSDCLDANDSVHDNANTSDCLDANNSVPNTVKVTKSLSGSNISVVTNMDYGNKQLCQNEVSLSPGKYSNAGSPQNRNLVDAGDELLKSSVISCSGKTRIQDGLDCLQHASALKHSSDNGSSNLEDSTSVDFSGIMHDAGKQVSPGHVIISPENCETEKAFPNYNVSAGSGEGDTNMIKKRKDRTHLKYLSSEMECLSPDYVNSDRLANNVDGGSSLLLKDPSPSEVLAQPVQSLDFNSLSGLDGVTALHVVNNDNDNANEVSPASKRKKVTANPYFTKCQSEFCAVIVPSPTSEAPVSFSDNQEHQKEVVFASMGMSILSTAQSILYSENITKMSENILAGGSFESIDADKETMSSEHLELQHSDIVSFSPSEDVAFPNVQLSSLEGECKENITPIVPTSNIQTDVLAVGIIAGQKTDLQAVEENYQYREHVQRSPRADMEPNDHNMKNDLLARQNLMSCPASSDEVTTSNLNNEVIEDVPDALSDMFSQGMASEVPDQRVLEFTAINDENICGVEENPDNNISIVGHGSDLNTSSIQQTRKNMKSGHAIEHSNLITKKTMSEPSQVSSRVTTQALNSYRFGLSGTKNQSGSVIPKTFPGHSFTFSKASASSPHVSKPRTWLRTGNIPPTSVLRIKPSVETVPPKRPILETKGNFQNTSYVRKGNSLVRKPTPVSTLPQISSVNQTSSLGIDEIPKSIKSGRRADGTDKPMYLKTGAINAPQQRTPPLPIDTKLEENRSSSLVEPPSGGCCENASDVRKFIETDNIAPNSSEDALKHCETPENQSGPSDNGESQGEANDGNVFPLNTKRIVYIKPKTNQLVATSNSYDVSVSTDDNLQTAFSDGYYKRRKNQLVRTTIESHINQTVAMPNNTANSDGQGTSNALCNRRFSKKRTHKVGRSSFKRSRASLVWTLCSKNSSENDRDSRHYQRALPLLFPWKRAAFASSLNNSSLSAISKKLLQLRKRDTVYTRSIHGFSLRKSRVLGVGGCSLKWSKSIEKNSKLANEEATLAVAAVERKKREQKNAVCISSLSKRERIFRIGSVRYRMDPSRRTLQRISDDESLSSASTCSGLASKRAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASICEGFLKGYCADGNECRKKHSYVCPTFEETGTCTQGTKCKLHHPKKQSKGKKRKRTAYQNNSRGRYFGSIPANVSESGMMLAPKRHRQSGELEEELSDYISLDDVNEEVLDTVDQSFEPATFCDNDSLDLQLDDFDELIKPVLLLKTKFTMQSPQFSSLQAFRQVAES*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo