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Report for Sequence Feature Glyma.14g149200

Feature Type:gene_model
Chromosome:Gm14
Start:32211624
stop:32212810
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g149200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18180.1AT Pectin lyase-like superfamily protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0004650GO-mf polygalacturonase activity EnsemblGenomesN/AIEA
GO:0004650GO-mf polygalacturonase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
PF00295PFAM Glycosyl hydrolases family 28 JGI N/AIEA
PWY-1081SoyCyc9 homogalacturonan degradation Plant Metabolic Network ISS
GN7V-45387SoyCyc9-rxn polygalacturonase Plant Metabolic Network ISS

Expression Patterns of Glyma.14g149200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g149200 not represented in the dataset
Glyma.14g149200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g149200
ParalogEvidenceComments
Glyma.13g080200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g149200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g23621 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g149200
>Glyma.14g149200.1 sequence-type=CDS polypeptide=Glyma.14g149200.1.p locus=Glyma.14g149200 ID=Glyma.14g149200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATGGTTTTTCCTCATAGTATGGTCACAATAGCTTTGGTGCTAATGTTAGCTTCATATGTCAAAGCTCATGTTGGCCTTTTTGATATAAGAAAATATGGTGCAATACCTAATGGAGATACGACCATGGATTTGCAGAATGCTTGGAGGGATGCATGTGTATCAATGACTCCAAGCAAAGTTGTAGTTCCTAGTGGTAAATATAAGTTGAGACAAATAGACTTTATGGGACTTATAAAGCTCATATTAAGGATTAGATTTGGATATATTAATTTCTTAACCTTATTTGGTAATGGAACTTTTCACGGTCAAGGCAAAATGGCTTGGAAACAAAATAATTGTGCAAAAAACAAGAATTGCAAAAAGCTCGCCATGAAAATTAACTCAAGCGATGGGAGTAAAGAAGTCACTATCCTAAATGTAACATGCGAACCTAGACATGGTATTAGTGTTGGAAGCTTAGGAAAATATTCAAATGAAGAGTCTGTAGAAGATCTTACTATCAAGAATTGTACACTAAAAAACACAAACAATGGTCTAAGGATCAAAACTTGGCCTAGTACTCCAATAACTTCTCTTGTGCCTAATTTGCATTTTGAAGATATCATAATGATTAATGTCAACAACCCTATAATTATAGGTCAAGAGTATTGTCCATGGAATCAATGCTCAATATAG
Predicted protein sequences of Glyma.14g149200
>Glyma.14g149200.1.p sequence-type=predicted peptide transcript=Glyma.14g149200.1 locus=Glyma.14g149200 ID=Glyma.14g149200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKMVFPHSMVTIALVLMLASYVKAHVGLFDIRKYGAIPNGDTTMDLQNAWRDACVSMTPSKVVVPSGKYKLRQIDFMGLIKLILRIRFGYINFLTLFGNGTFHGQGKMAWKQNNCAKNKNCKKLAMKINSSDGSKEVTILNVTCEPRHGISVGSLGKYSNEESVEDLTIKNCTLKNTNNGLRIKTWPSTPITSLVPNLHFEDIIMINVNNPIIIGQEYCPWNQCSI*






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