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Report for Sequence Feature Glyma.14g145600

Feature Type:gene_model
Chromosome:Gm14
Start:30548555
stop:30559140
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g145600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60080.1AT 3'-5'-exoribonuclease family protein JGI N/AIEA
GO:0000467GO-bp exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
GO:0006401GO-bp RNA catabolic process EnsemblGenomesN/AIEA
GO:0034427GO-bp nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' EnsemblGenomesN/AIEA
GO:0034473GO-bp U1 snRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0034475GO-bp U4 snRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0034476GO-bp U5 snRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0043928GO-bp exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay EnsemblGenomesN/AIEA
GO:0071028GO-bp nuclear mRNA surveillance EnsemblGenomesN/AIEA
GO:0071035GO-bp nuclear polyadenylation-dependent rRNA catabolic process EnsemblGenomesN/AIEA
GO:0071038GO-bp nuclear polyadenylation-dependent tRNA catabolic process EnsemblGenomesN/AIEA
GO:0071042GO-bp nuclear polyadenylation-dependent mRNA catabolic process EnsemblGenomesN/AIEA
GO:0000176GO-cc nuclear exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0000177GO-cc cytoplasmic exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0000178GO-cc exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0017091GO-mf AU-rich element binding EnsemblGenomesN/AIEA
KOG1613 KOG Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 JGI N/AIEA
PTHR11097Panther EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) JGI N/AIEA
PTHR11097:SF9Panther EXOSOME COMPLEX COMPONENT RRP43 JGI N/AIEA
PF01138PFAM 3' exoribonuclease family, domain 1 JGI N/AIEA

Expression Patterns of Glyma.14g145600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g145600 not represented in the dataset
Glyma.14g145600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.14g145600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g22250 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.14g145600
>Glyma.14g145600.2 sequence-type=transcript locus=Glyma.14g145600 ID=Glyma.14g145600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGATTAGTACTGGTGAACCTATATTTGTTGTTCGCGTTTTGAAGTTCTCTTTCGCGACACAGGAAAGAAAGATCGAGGTTTCTCTTCACTCATCCTTCGCCCTAGCTGCGTATCCCTACCACCGTTCTAGACAGGACCTACACTTTCTTTTTGTTGCAGAACATAGAAAATAGATGGGATTGTCGAATGCTTCTGAGGATTTGTCATCAGAGATGGAGGTTGATGCCTTTAGACGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCAGGCCTGCTGAAGCATCACCGGTGGTATCAAAGCAGTTGTCTGACACCATTTCAAGTTCTAGAATGATTGATTTGAAAGAATTGTCCTTGGTTGGTGGAAAAGCTGCATGGATGGCTTACCTGGATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGTCTGGCGAAGATGGACAAAAGCCAGTCAATAAGGAGAAGAGGAAGCTTACATTAAGAAGCATTCCATTCTCATTAACATGCATACTTCACAAGAATTACATCTTGGCAGATCCTACTGCTGAAGAAGAATCTATTATGGAAACCCATGTGACAATAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGAGTAGAATTATTAATTACACAGTAATCTTTTTTGTCCTGAATGGTTGTTTAAATTATTATAGTATTTGTACATTCAGGAATCAGGATCACAGGTACTGTGGCCTTTCACTATAAAAGAAATTATTTTACGAATTTATTCCATCTATTGGAACATTAATTTGTTGTCATTTCGGCATTTGATTTCACATATATGGCGGATGGTTTT

>Glyma.14g145600.3 sequence-type=transcript locus=Glyma.14g145600 ID=Glyma.14g145600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGATTAGTACTGGTGAACCTATATTTGTTGTTCGCGTTTTGAAGTTCTCTTTCGCGACACAGGAAAGAAAGATCGAGGTTTCTCTTCACTCATCCTTCGCCCTAGCTGCGTATCCCTACCACCGTTCTAGACAGGACCTACAAACATAGAAAATAGATGGGATTGTCGAATGCTTCTGAGGATTTGTCATCAGAGATGGAGGTTGATGCCTTTAGACGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCAGGCCTGCTGAAGCATCACCGGTGGTATCAAAGCAGTTGTCTGACACCATTTCAAGTTCTAGAATGATTGATTTGAAAGAATTGTCCTTGGTTGGTGGAAAAGCTGCATGGATGGCTTACCTGGATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGTCTGGCGAAGATGGACAAAAGCCAGTCAATAAGGAGAAGAGGAAGCTTACATTAAGAAGCATTCCATTCTCATTAACATGCATACTTCACAAGAATTACATCTTGGCAGATCCTACTGCTGAAGAAGAATCTATTATGGAAACCCATGTGACAATAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGAGTAGAATTATTAATTACACAGTAATCTTTTTTGTCCTGAATGGTTGTTTAAATTATTATAGTATTTGTACATTCAGGAATCAGGATCACAGGTACTGTGGCCTTTCACTATAAAAGAAATTATTTTACGAATTTATTCCATCTATTGGAACATTAATTTGTTGTCATTTCGGCATTTGATTTCACATATATGGCGGATGGTTTT
Coding sequences of Glyma.14g145600
>Glyma.14g145600.1 sequence-type=CDS polypeptide=Glyma.14g145600.1.p locus=Glyma.14g145600 ID=Glyma.14g145600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATTGTCGAATGCTTCTGAGGATTTGTCATCAGAGATGGAGGTTGATGCCTTTAGACGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCAGGCCTGCTGAAGCATCACCGGTGGTATCAAAGCAGTTGTCTGACACCATTTCAAGTTCTAGAATGATTGATTTGAAAGAATTGTCCTTGGTTGGTGGAAAAGCTGCATGGATGGCTTACCTGAATGCTGCCTTCTCTATCATGCAGGATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGTCTGGCGAAGATGGACAAAAGCCAGTCAATAAGGAGAAGAGGAAGCTTACATTAAGAAGCATTCCATTCTCATTAACATGCATACTTCACAAGAATTACATCTTGGCAGATCCTACTGCTGAAGAAGAATCTATTATGGAAACCCATGTGACAATAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGA

>Glyma.14g145600.2 sequence-type=CDS polypeptide=Glyma.14g145600.2.p locus=Glyma.14g145600 ID=Glyma.14g145600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATTGTCGAATGCTTCTGAGGATTTGTCATCAGAGATGGAGGTTGATGCCTTTAGACGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCAGGCCTGCTGAAGCATCACCGGTGGTATCAAAGCAGTTGTCTGACACCATTTCAAGTTCTAGAATGATTGATTTGAAAGAATTGTCCTTGGTTGGTGGAAAAGCTGCATGGATGGCTTACCTGGATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGTCTGGCGAAGATGGACAAAAGCCAGTCAATAAGGAGAAGAGGAAGCTTACATTAAGAAGCATTCCATTCTCATTAACATGCATACTTCACAAGAATTACATCTTGGCAGATCCTACTGCTGAAGAAGAATCTATTATGGAAACCCATGTGACAATAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGA

>Glyma.14g145600.3 sequence-type=CDS polypeptide=Glyma.14g145600.3.p locus=Glyma.14g145600 ID=Glyma.14g145600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATTGTCGAATGCTTCTGAGGATTTGTCATCAGAGATGGAGGTTGATGCCTTTAGACGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCAGGCCTGCTGAAGCATCACCGGTGGTATCAAAGCAGTTGTCTGACACCATTTCAAGTTCTAGAATGATTGATTTGAAAGAATTGTCCTTGGTTGGTGGAAAAGCTGCATGGATGGCTTACCTGGATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGTCTGGCGAAGATGGACAAAAGCCAGTCAATAAGGAGAAGAGGAAGCTTACATTAAGAAGCATTCCATTCTCATTAACATGCATACTTCACAAGAATTACATCTTGGCAGATCCTACTGCTGAAGAAGAATCTATTATGGAAACCCATGTGACAATAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGA
Predicted protein sequences of Glyma.14g145600
>Glyma.14g145600.1.p sequence-type=predicted peptide transcript=Glyma.14g145600.1 locus=Glyma.14g145600 ID=Glyma.14g145600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKAAWMAYLNAAFSIMQDIYCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSGEDGQKPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYKPGGPALAYTSAIQDCVGLTGQRVKELKSYLDKENSAMEVVV*

>Glyma.14g145600.2.p sequence-type=predicted peptide transcript=Glyma.14g145600.2 locus=Glyma.14g145600 ID=Glyma.14g145600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKAAWMAYLDIYCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSGEDGQKPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYKPGGPALAYTSAIQDCVGLTGQRVKELKSYLDKENSAMEVVV*

>Glyma.14g145600.3.p sequence-type=predicted peptide transcript=Glyma.14g145600.3 locus=Glyma.14g145600 ID=Glyma.14g145600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKAAWMAYLDIYCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSGEDGQKPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYKPGGPALAYTSAIQDCVGLTGQRVKELKSYLDKENSAMEVVV*






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