SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31210.1 | AT | DNA topoisomerase, type IA, core | JGI | N/A | IEA |
| GO:0006265 | GO-bp | DNA topological change | EnsemblGenomes | N/A | IEA |
| GO:0006265 | GO-bp | DNA topological change | JGI | N/A | IEA |
| GO:0005694 | GO-cc | chromosome | EnsemblGenomes | N/A | IEA |
| GO:0005694 | GO-cc | chromosome | JGI | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003916 | GO-mf | DNA topoisomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003916 | GO-mf | DNA topoisomerase activity | JGI | N/A | IEA |
| GO:0003917 | GO-mf | DNA topoisomerase type I activity | EnsemblGenomes | N/A | IEA |
| KOG1956 | KOG | DNA topoisomerase III alpha | JGI | N/A | IEA |
| PTHR11390 | Panther | PROKARYOTIC DNA TOPOISOMERASE | JGI | N/A | IEA |
| PF01131 | PFAM | DNA topoisomerase | JGI | N/A | IEA |
| PF01396 | PFAM | Topoisomerase DNA binding C4 zinc finger | JGI | N/A | IEA |
| PF01751 | PFAM | Toprim domain | JGI | N/A | IEA |
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Glyma.14g137100 not represented in the dataset |
Glyma.14g137100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma14g18300 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.14g137100.1 sequence-type=CDS polypeptide=Glyma.14g137100.1.p locus=Glyma.14g137100 ID=Glyma.14g137100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATTCAACTTCACAGAACCTTCTTCTCCACCACCACCTCCTCCGTTCCTTCCTCATACCCTCTCTCTCTTGGCCACTTCATGTTGCAGTTCAGGGCGCTCCAGGCTCCACCAATTGCTCTCGCGCCGCACGCCACGTCATCCCTCATCGGCGCCACCGTCCAATGCCGAACGCGTCTTCTCTTCCCTCGAAGGGTTACCGCGAAATGCCACGCGACGTCGTTTAGCAATTTCCGTTTCCCGTTTGCTTTGAACTCCACGACGTCGTTTGGGGGCAGCGTTTTCTCGAGGGGGTTTGCGACGCGCGCGGCGGAGAACGGTAAGCAGAAGAAACGGGCGAGGGCTGCTGTCGTTCGCGGAAAGGAGAAGGACGAAGGTGTGATAAATGACGCCGCGCCGAAAGAGTTTGACAATGTGACCGCTTCTGAGGGAAGTTTGGGTGAGAAGAAGAAGAATAAGAAGGGATCGTCACCCGTCGCCGCTAGTGGCAAAGAAGATGAGAAGAGTGTGAAGAAGAAAACGGCGAAGAAGAAGACCACGACGACTTTGCGGAGCAAGAAGGTGGCTGCCAGCAGCACCCAAGAGGATGGTGCTGCTGAAGCTTCTAAAAAATCTTACAAAGGGAAGAAGAAGAAGGATTCGAAGAAGAGTTTGACCGAGAGTGCTATTGAAGAAATGCCGGAGAATTCTGCTTCTGCAAAGGACGAGTTGAAGAAGAAAAATGGGAATTCTAGTGTGATTGAAGAGGTGAAACCCCCATGGAATTTTACGTACAAGCCATTGTATCCTCCCACTAGAAAGTCTGTGGTGGTTGTGGAGTCTGTTACAAAGGCGAAGGTTATTAAGAGATACCTTGGTGATATGTATGAAGTCTTGCCAAGCTATGGTCATGTGAGAGACTTGGCTGCAAGGTCTGGATCAGTGAGACCTGATGATGATTTTAGTATGGTGTGGGAGGTTCCGCCGCCTGCCTGGACTCATTTGAAGAGCATCAAGGTTGCACTGAGCAGAGCAGAAAACCTTATTCTTGCATCGGATCCAGATCGTGAGGGAGAAGCTATTGCTTGGCACATCATTGAGATGTTACAACAACAGGGTGCTCTACACGATAATATTTCCTTAGCAAGAGTAGTCTTTCACGAAATAACTGAAAAATCCATAAAAGGTGCCCTACAAACACCACGAGAGATTGACGTAAATTTGGTTCAAGCTTACCTTGCTCGGCGGGCTCTTGATTACTTGATTGGGTTTAACATTTCACCATTACTATGGAGGAAGTTACCAGGTTGCCAATCAGCTGGAAGAGTTCAATCTGCTGCACTTTCTCTTATATGTGATAGAGAAATGGAAATTGATGAATTTAAACCGAAGGAGTATTGGACTGTGGAGGTTCAAATGAAAAAGAAAGAGCTGAGATCAAACAAGAACCTTACTTTTCCTGCTCACTTGACCCATTTTGATTCAAAAAAGTTGAATAAGTTTTCAATTACTTCTGATACCGAGGCAAGAGATATTCGAAGCAATATAAACTCAGCTGATTTTCATGTTGTTAGCTTGAAAAAAAACAAAAGTCGAAGAAATCCTCCAACACCTTATATAACATCGACACTTCAGCAAGATGCTGCAAACAAGTTGCATTTCACTGCAAGTCACACAATGAAGCTTGCACAGAAGCTCTACGAGGGAGTTGAACTGTCTGACAGTGTAGCAGTGGGTCTGATAACATATATCAGAACTGATGGACTCCATATTTCTGATGAAGCTGTAGCTAGTATACGCTCGCTGATCATTGAAAGGTATGGACAAGATTTTGTCTCACAAAGTGCACCAAAGTATTATAAAAAGGTGAAAAATGCACAAGAGGCCCATGAAGCCATTAGACCAACTGACATACGCAAGTTGCCATCAATGCTTTCTGCGATACTTGATGAAGAATCCTTGAAGCTCTACACACTTATTTGGTCACGAACAGTTTCATGTCAAATGGAACCTGCTGTCTTTGAGCAGATACAACTTGATATTGGAAATCTTGATGAGTCTATTATATTACAGTCTTCCATCTCAAGGGTTGAGTTTCCTGGATATCGAGCAGTTTTTACGGACATTGTTAGTGAAGCTGTTCAAGATAAAGGCAGTGATGAATCCAGCCATGATCAAACATTTGGAGTACTAAATTCCTTGAAGACAGGGGATTCATTACACGTGGTTCAAACTGAACCTAATCAGCACCATACACAGCCGCCACCACGGTACTCTGAAGCATCATTGGTTAAGAAGCTTGAGGAGCTTGGGATTGGAAGGCCATCAACATATGCATCCACGATAAAAGTTTTGCAGGATAGAAACTATGTGACAGTAAAAAGTCGAGTTCTGTCTCCAGAATTTCGTGGTCGCATGGTTTCAGCTTTTCTGTCGAACCATTTTTCAGAGGTCACGGACTACAGTTTTACTGCCGATATGGAAACCGAGCTTGATAATGTTTCTGCTGGATTAACTGAATGGAAAGGCCTCCTTAGAGACTATTGGACACGATTTAAATCATATTGTGAGCGTACTTCCAATGTTCATATTCATCAGGTAGAGAAGATGTTGGAAAAGAAATTTGGCGATTATTTATTTGCTTCTCTCCCAGATCAGAGTCGGGTGTGTCCAAGCTGTATGGAAGGCACACTTATTTTTAAAGTAAGTAGATTTGGTGCTGGGTACTTTATAGGCTGTGATCAACATCCGAGGTGCAAGTACATTGCTAAAACATTATATGGTACCGAGGAGGAAGAGGATGCATCTCAGCCAAACACTAGAATAGAGGAACCAAAACTCCTTGGTGTTACCAGTGGTTCAAATGAAAAGGTTCTTTTGAAAAGTGGTCCTTACGGAGTCTATGTTCAGCTCGGAGAAGATAGGAAGGGATACATACCTAGAAGAGCTTCTGTCTCTCATATCAAGGATGTGGATTCTATCACTCTTAAAGATGCACTTGAGGTGCTACAATACCCATTGACATTGGGTAACCATCCTAAGGATGGACAGCCTGTCATATTAAGGCTTGCAAGAGCTGGGTTTTGTGTTAGACATCGGCGAACAATTGCTTCTATTCCTAAGAATGTGAAGCCAAGTGATGTCACCCTGGAAAAAGCCCTTGAATATTTATCTGGTGATGATGTGAGACGATCTGGTCGTCCAAAAAAAGGCAAATCTAAAGTTGAAGTTGAAGTTATTGAAGCGTTTTAA
>Glyma.14g137100.1.p sequence-type=predicted peptide transcript=Glyma.14g137100.1 locus=Glyma.14g137100 ID=Glyma.14g137100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MIQLHRTFFSTTTSSVPSSYPLSLGHFMLQFRALQAPPIALAPHATSSLIGATVQCRTRLLFPRRVTAKCHATSFSNFRFPFALNSTTSFGGSVFSRGFATRAAENGKQKKRARAAVVRGKEKDEGVINDAAPKEFDNVTASEGSLGEKKKNKKGSSPVAASGKEDEKSVKKKTAKKKTTTTLRSKKVAASSTQEDGAAEASKKSYKGKKKKDSKKSLTESAIEEMPENSASAKDELKKKNGNSSVIEEVKPPWNFTYKPLYPPTRKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPPPAWTHLKSIKVALSRAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLARVVFHEITEKSIKGALQTPREIDVNLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPKEYWTVEVQMKKKELRSNKNLTFPAHLTHFDSKKLNKFSITSDTEARDIRSNINSADFHVVSLKKNKSRRNPPTPYITSTLQQDAANKLHFTASHTMKLAQKLYEGVELSDSVAVGLITYIRTDGLHISDEAVASIRSLIIERYGQDFVSQSAPKYYKKVKNAQEAHEAIRPTDIRKLPSMLSAILDEESLKLYTLIWSRTVSCQMEPAVFEQIQLDIGNLDESIILQSSISRVEFPGYRAVFTDIVSEAVQDKGSDESSHDQTFGVLNSLKTGDSLHVVQTEPNQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTIKVLQDRNYVTVKSRVLSPEFRGRMVSAFLSNHFSEVTDYSFTADMETELDNVSAGLTEWKGLLRDYWTRFKSYCERTSNVHIHQVEKMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKYIAKTLYGTEEEEDASQPNTRIEEPKLLGVTSGSNEKVLLKSGPYGVYVQLGEDRKGYIPRRASVSHIKDVDSITLKDALEVLQYPLTLGNHPKDGQPVILRLARAGFCVRHRRTIASIPKNVKPSDVTLEKALEYLSGDDVRRSGRPKKGKSKVEVEVIEAF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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