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Report for Sequence Feature Glyma.14g101000

Feature Type:gene_model
Chromosome:Gm14
Start:10003895
stop:10007986
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g101000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10810.1AT enhancer of rudimentary protein, putative JGI N/AIEA
GO:0006221GO-bp pyrimidine nucleotide biosynthetic process EnsemblGenomesN/AIEA
GO:0007049GO-bp cell cycle EnsemblGenomesN/AIEA
GO:0007049GO-bp cell cycle JGI N/AIEA
GO:0045747GO-bp positive regulation of Notch signaling pathway EnsemblGenomesN/AIEA
KOG1766 KOG Enhancer of rudimentary JGI N/AIEA
PTHR12373Panther ENHANCER OF RUDIMENTARY ERH JGI N/AIEA
PF01133PFAM Enhancer of rudimentary JGI N/AIEA

Expression Patterns of Glyma.14g101000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g101000
ParalogEvidenceComments
Glyma.17g224100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g101000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g11660 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g101000
>Glyma.14g101000.1 sequence-type=CDS polypeptide=Glyma.14g101000.1.p locus=Glyma.14g101000 ID=Glyma.14g101000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAATCGGCACACGATTATTCTAATGCAGACCTCGCAGAACAGAGCAACTAGGACGTTCATGGATTATGAATCCATAACTCAGGCCATGGATGGCATATGTGCACTGTATGAAAGGAAACTGAAGGAGTTGAATCCGGCTATCAGAAATCTCTCTTATGACATTACTGATCTCTACAACTTCATAGATGGTCTTGCGGACATGAGTGCCCTAGTGTATGATAGTTCAATTCACGCTTACTTGCCGCATGATCGACTGTGGATCAAGCAACGAACATTCCAACATTTGAAGAAATTAGCACACTGA
Predicted protein sequences of Glyma.14g101000
>Glyma.14g101000.1.p sequence-type=predicted peptide transcript=Glyma.14g101000.1 locus=Glyma.14g101000 ID=Glyma.14g101000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANRHTIILMQTSQNRATRTFMDYESITQAMDGICALYERKLKELNPAIRNLSYDITDLYNFIDGLADMSALVYDSSIHAYLPHDRLWIKQRTFQHLKKLAH*






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