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Report for Sequence Feature Glyma.14g088400

Feature Type:gene_model
Chromosome:Gm14
Start:7942292
stop:7944571
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g088400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33880.1AT ROOT HAIR DEFECTIVE 6-LIKE 2 JGI N/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0001046GO-mf core promoter sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0001228GO-mf transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PTHR10014Panther BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCRIPTION FACTOR JGI N/AIEA
PTHR10014:SF30Panther JGI N/AIEA
PF00010PFAM Helix-loop-helix DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.14g088400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g088400 not represented in the dataset
Glyma.14g088400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g088400
ParalogEvidenceComments
Glyma.17g236100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g088400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g09781 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g088400
>Glyma.14g088400.1 sequence-type=CDS polypeptide=Glyma.14g088400.1.p locus=Glyma.14g088400 ID=Glyma.14g088400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACCTGCAGGAGCCTTCCCTGATGGAGAATGGGATTTCTTTCGCCGAATATTTGCCGGTGAGGATCATGAGCATGATTTATTCACACCCCAATTTCCACTTCTGCTTGATGGCGATGATGAATTGAACATTGTGACACAACCCACATTTTGTGCTGCTCCTGAAGTTGGTGAAAATGAGCGTATGTTTTATTCTTTAGATGCTCACCACTCAAATTCTTCTCAGTATATTTCACAAGAAAGTAGCCATAGTAATAGTAGCAATTGTAGTGGTGATGACACTATCTTCATTGCCAATCCGGGTAGCACAAACTATTATTTTAGTTACCCTGATCATGTGCTAGCAAATAATGCATGTGTATATTCCATGGATGAGAAATATTTTGCCTCTTTTGTCCCATCGCTTGCTGACATTGTAACGGAAGAGAGTGTCAAGTTGCATGAAGATGTAGCAAGTGATGACAGATTGGAGAATTCTGAATGCAATCAAATGGAACCTATCGTTTTTCCCAGCAAGCAGTTGCAGCTCAAAAGGAAGCTTGATGTGCCTGCTGAAGATAAAATGAACAAAGGATCTGAGAATCAAAAGAAAAGGGCTCGTGCTTTAAAAGATGGGCAAGGATGCATGAAAAACACATGGTCCAAGAAGAATCAGAAACATGCCAGCAACGGGGAAGAAGCAGAAGAGACTAATGCAGGTTCAGATGGGCAAAGCTCTAGTAGTAACATGTCAGAGGATGATAACATTTCTAAATCTGCTCTCAACTCAAATGGGAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGTCTGTATGCAAGGAAAAGAAGAGAGAGAATAAATGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACCAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCAATTACGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCCGATGATCTATGGATGTATGCTCCACTTGCTTACAATGGGCTTGATATTGGACTCAATCTCAACTCCCTATCACTTTAA
Predicted protein sequences of Glyma.14g088400
>Glyma.14g088400.1.p sequence-type=predicted peptide transcript=Glyma.14g088400.1 locus=Glyma.14g088400 ID=Glyma.14g088400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEPAGAFPDGEWDFFRRIFAGEDHEHDLFTPQFPLLLDGDDELNIVTQPTFCAAPEVGENERMFYSLDAHHSNSSQYISQESSHSNSSNCSGDDTIFIANPGSTNYYFSYPDHVLANNACVYSMDEKYFASFVPSLADIVTEESVKLHEDVASDDRLENSECNQMEPIVFPSKQLQLKRKLDVPAEDKMNKGSENQKKRARALKDGQGCMKNTWSKKNQKHASNGEEAEETNAGSDGQSSSSNMSEDDNISKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNSLSL*






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