SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.14g083400

Feature Type:gene_model
Chromosome:Gm14
Start:7265062
stop:7272886
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g083400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G45231.2AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0001510GO-bp RNA methylation EnsemblGenomesN/AIEA
GO:0001510GO-bp RNA methylation JGI N/AIEA
GO:0009452GO-bp 7-methylguanosine RNA capping EnsemblGenomesN/AIEA
GO:0009452GO-bp 7-methylguanosine RNA capping JGI N/AIEA
GO:0036261GO-bp 7-methylguanosine cap hypermethylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity JGI N/AIEA
GO:0071164GO-mf RNA trimethylguanosine synthase activity EnsemblGenomesN/AIEA
KOG2730 KOG Methylase JGI N/AIEA
PTHR14741Panther S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED JGI N/AIEA
PF09445PFAM RNA cap guanine-N2 methyltransferase JGI N/AIEA
GN7V-66095SoyCyc9-rxn noranthrone synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.14g083400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g083400
ParalogEvidenceComments
Glyma.17g241700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g083400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g09160 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g083400
>Glyma.14g083400.1 sequence-type=CDS polypeptide=Glyma.14g083400.1.p locus=Glyma.14g083400 ID=Glyma.14g083400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTCATCGTCGATTCCGATTACGAAGGTGCCGCCATCGAAGCCCTCGGTTCTCTCTTCAAGGTCACCCAAGTCTTCCTCTGGGATGATGGCCTTCAGGTTTCATCCTCAGCTGAACGCTGGAAATTGGATGAAGCTGATGACAATCACGGCTCTGACCCCGTTCCTGATTTGATTGACCTTATTACACCCGAGGATTTGGAGCTTACCAAACAGCTGAATGAATTGGGGCTCCCTCTTTCCTTCCAGACAAACAAAGAGAAAAATGGACCAGTAAAAGGCAAAAAAAAGGGTAAACTTTTGAAGCATCCAAATACTTGTCACAACCCTGTAGATGAAACTCTATATGAAGTGAGTGGGGAGGAGATTGTATCTCCCGCTAAATTTCATGATAAAACTAGCAGTCCTTTATCTTGTATATCAATGCTGGGCCAAAGTGAATCTTCTTTCCTTGAAGGTGCCATGGATATTGATATGACCCAATGTGCCTATGGTGAAGGAGCTAATTCTGCTTGCTGTACTGGGTTTGCTAGTGGTGTTTGCAGGGAGATAAATAATGATAATATAAATCAGGTAGCAACTAATGATGACCAAGATGATGACTTTTTAATCAGTAATGATCGTGTTGATTTGAAAACTGCACCTGCTTCAGATACTGGAGTCTCTGCTGGAAGCCATTTGAAAGGTGCTGGTGTCAATTATTGTGGTACAGAATATGATGAAAGCTTGATTGACAGTGAATGTTTAGAAGTTTCACCAATTGTTGGCAAAAATACAGATTGTGATACTATTTACAATGATGATGGTGCTGCCACTTGTCATCCACATTCTATTGAATCAGAGTTGCATCCTGTGAGTTCAGAAGGGATTGAATGTGACAGAAATGATGTTTCAAATAATTATGCTGAACATGGAGATTGGATGGTCGTCTGGGATACTTTCTATGAGAGAACATACTTCTACAATATTAGAACACACACTTCTACATGGGATGCACCCTCAGGGATGGAGCATCTGGCAACTGGCAGGTATACTGAATCAGATGATAGTAAAACTCTCAAGGCATCAGAAGAATGGGGAATACAAAATAGCACCAAACCACCTGAGGAAACCTTGATTGAAGAGAACTTGGAAGTAAAGCAACATGAAGAGTATTTGACAGAGAGTGGAGTTGCTGTTGGCAATTTGGTCTCTGATATCACTACACATGGTGAAGACCAATCGCTCAATCATTCAGATGGGTGTCATGAGAGAAGTAGTTGCAATGATGGAGTTTCATGCTGCTTAATATCAAATACTCTGGATCATATCAATAGCTCTAATGAAGGATGCATTCAGGCAGCATCAGAGGATAATCATACACCCTTGGAAAACATGTTAATTGATATGTCTGGATTGGATTCTAAATCTGATCCTTTCGAGTCAAAACAGGGAAAGAAAGTAAAAAGAAGACAAAGGCAGAGGAAATTATATAATGAAGCTGAGGATCTCCACTTTCAAGAAATGCCTGAAGTGTATTCTGCTGCAGTTGGCAAATATTGGTGTCAGAGGTATAGTTTGTTCTCTAGATTTGATGATGGTGTAAAACTGGATGAGGAAGGATGGTTTTCTGTCACTCCAGAGGTTATTGCTCGGCATCAAGCAATACGTTGTGCAAGTGGTGTGATAATTGACGGTTTCACTGGTGTTGGTGGGAATGCTATCCAATTTGCACAACAGTGCAGGCATGTAATCGGAATTGATATTGATCCATTGAAGATCGAATATGCTAGGCATAATGCTGCTATTTATGGTGTAGATGATCAAATTGAATTTGTAGTGGGTGATTTCTTCCACTTGGCACCAATGTTAAAGGCTGATACTGTTTTCTTATCTCCACCATGGGGGGGACCTGATTATGTCAAGGCTGCTACTTATGACTTGAAGACGATGCTTAGACCACATGATGGATATACACTGTTTAATGTTGCAAAGGAGATTGCTTCCAGAGTTGTTATGTTCCTTCCAAGAAATATCAATTTCAACCAATTGGCAGAGTTATCTCTGTCATCCTGTCCATCATGGTCACTAGAGGTGGAGAAAGTTTATTTAAATAATAAATTGAAGGCGATCACTGCTTATTTCAGTTCTACATCAGGTGGAGGGTGCTAG
Predicted protein sequences of Glyma.14g083400
>Glyma.14g083400.1.p sequence-type=predicted peptide transcript=Glyma.14g083400.1 locus=Glyma.14g083400 ID=Glyma.14g083400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVIVDSDYEGAAIEALGSLFKVTQVFLWDDGLQVSSSAERWKLDEADDNHGSDPVPDLIDLITPEDLELTKQLNELGLPLSFQTNKEKNGPVKGKKKGKLLKHPNTCHNPVDETLYEVSGEEIVSPAKFHDKTSSPLSCISMLGQSESSFLEGAMDIDMTQCAYGEGANSACCTGFASGVCREINNDNINQVATNDDQDDDFLISNDRVDLKTAPASDTGVSAGSHLKGAGVNYCGTEYDESLIDSECLEVSPIVGKNTDCDTIYNDDGAATCHPHSIESELHPVSSEGIECDRNDVSNNYAEHGDWMVVWDTFYERTYFYNIRTHTSTWDAPSGMEHLATGRYTESDDSKTLKASEEWGIQNSTKPPEETLIEENLEVKQHEEYLTESGVAVGNLVSDITTHGEDQSLNHSDGCHERSSCNDGVSCCLISNTLDHINSSNEGCIQAASEDNHTPLENMLIDMSGLDSKSDPFESKQGKKVKRRQRQRKLYNEAEDLHFQEMPEVYSAAVGKYWCQRYSLFSRFDDGVKLDEEGWFSVTPEVIARHQAIRCASGVIIDGFTGVGGNAIQFAQQCRHVIGIDIDPLKIEYARHNAAIYGVDDQIEFVVGDFFHLAPMLKADTVFLSPPWGGPDYVKAATYDLKTMLRPHDGYTLFNVAKEIASRVVMFLPRNINFNQLAELSLSSCPSWSLEVEKVYLNNKLKAITAYFSSTSGGGC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo