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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G45231.2 | AT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | JGI | N/A | IEA |
| GO:0001510 | GO-bp | RNA methylation | EnsemblGenomes | N/A | IEA |
| GO:0001510 | GO-bp | RNA methylation | JGI | N/A | IEA |
| GO:0009452 | GO-bp | 7-methylguanosine RNA capping | EnsemblGenomes | N/A | IEA |
| GO:0009452 | GO-bp | 7-methylguanosine RNA capping | JGI | N/A | IEA |
| GO:0036261 | GO-bp | 7-methylguanosine cap hypermethylation | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | JGI | N/A | IEA |
| GO:0071164 | GO-mf | RNA trimethylguanosine synthase activity | EnsemblGenomes | N/A | IEA |
| KOG2730 | KOG | Methylase | JGI | N/A | IEA |
| PTHR14741 | Panther | S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED | JGI | N/A | IEA |
| PF09445 | PFAM | RNA cap guanine-N2 methyltransferase | JGI | N/A | IEA |
| GN7V-66095 | SoyCyc9-rxn | noranthrone synthase | Plant Metabolic Network | ISS |
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Glyma.14g083400 not represented in the dataset |
Glyma.14g083400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g241700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma14g09160 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.14g083400.1 sequence-type=CDS polypeptide=Glyma.14g083400.1.p locus=Glyma.14g083400 ID=Glyma.14g083400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTCATCGTCGATTCCGATTACGAAGGTGCCGCCATCGAAGCCCTCGGTTCTCTCTTCAAGGTCACCCAAGTCTTCCTCTGGGATGATGGCCTTCAGGTTTCATCCTCAGCTGAACGCTGGAAATTGGATGAAGCTGATGACAATCACGGCTCTGACCCCGTTCCTGATTTGATTGACCTTATTACACCCGAGGATTTGGAGCTTACCAAACAGCTGAATGAATTGGGGCTCCCTCTTTCCTTCCAGACAAACAAAGAGAAAAATGGACCAGTAAAAGGCAAAAAAAAGGGTAAACTTTTGAAGCATCCAAATACTTGTCACAACCCTGTAGATGAAACTCTATATGAAGTGAGTGGGGAGGAGATTGTATCTCCCGCTAAATTTCATGATAAAACTAGCAGTCCTTTATCTTGTATATCAATGCTGGGCCAAAGTGAATCTTCTTTCCTTGAAGGTGCCATGGATATTGATATGACCCAATGTGCCTATGGTGAAGGAGCTAATTCTGCTTGCTGTACTGGGTTTGCTAGTGGTGTTTGCAGGGAGATAAATAATGATAATATAAATCAGGTAGCAACTAATGATGACCAAGATGATGACTTTTTAATCAGTAATGATCGTGTTGATTTGAAAACTGCACCTGCTTCAGATACTGGAGTCTCTGCTGGAAGCCATTTGAAAGGTGCTGGTGTCAATTATTGTGGTACAGAATATGATGAAAGCTTGATTGACAGTGAATGTTTAGAAGTTTCACCAATTGTTGGCAAAAATACAGATTGTGATACTATTTACAATGATGATGGTGCTGCCACTTGTCATCCACATTCTATTGAATCAGAGTTGCATCCTGTGAGTTCAGAAGGGATTGAATGTGACAGAAATGATGTTTCAAATAATTATGCTGAACATGGAGATTGGATGGTCGTCTGGGATACTTTCTATGAGAGAACATACTTCTACAATATTAGAACACACACTTCTACATGGGATGCACCCTCAGGGATGGAGCATCTGGCAACTGGCAGGTATACTGAATCAGATGATAGTAAAACTCTCAAGGCATCAGAAGAATGGGGAATACAAAATAGCACCAAACCACCTGAGGAAACCTTGATTGAAGAGAACTTGGAAGTAAAGCAACATGAAGAGTATTTGACAGAGAGTGGAGTTGCTGTTGGCAATTTGGTCTCTGATATCACTACACATGGTGAAGACCAATCGCTCAATCATTCAGATGGGTGTCATGAGAGAAGTAGTTGCAATGATGGAGTTTCATGCTGCTTAATATCAAATACTCTGGATCATATCAATAGCTCTAATGAAGGATGCATTCAGGCAGCATCAGAGGATAATCATACACCCTTGGAAAACATGTTAATTGATATGTCTGGATTGGATTCTAAATCTGATCCTTTCGAGTCAAAACAGGGAAAGAAAGTAAAAAGAAGACAAAGGCAGAGGAAATTATATAATGAAGCTGAGGATCTCCACTTTCAAGAAATGCCTGAAGTGTATTCTGCTGCAGTTGGCAAATATTGGTGTCAGAGGTATAGTTTGTTCTCTAGATTTGATGATGGTGTAAAACTGGATGAGGAAGGATGGTTTTCTGTCACTCCAGAGGTTATTGCTCGGCATCAAGCAATACGTTGTGCAAGTGGTGTGATAATTGACGGTTTCACTGGTGTTGGTGGGAATGCTATCCAATTTGCACAACAGTGCAGGCATGTAATCGGAATTGATATTGATCCATTGAAGATCGAATATGCTAGGCATAATGCTGCTATTTATGGTGTAGATGATCAAATTGAATTTGTAGTGGGTGATTTCTTCCACTTGGCACCAATGTTAAAGGCTGATACTGTTTTCTTATCTCCACCATGGGGGGGACCTGATTATGTCAAGGCTGCTACTTATGACTTGAAGACGATGCTTAGACCACATGATGGATATACACTGTTTAATGTTGCAAAGGAGATTGCTTCCAGAGTTGTTATGTTCCTTCCAAGAAATATCAATTTCAACCAATTGGCAGAGTTATCTCTGTCATCCTGTCCATCATGGTCACTAGAGGTGGAGAAAGTTTATTTAAATAATAAATTGAAGGCGATCACTGCTTATTTCAGTTCTACATCAGGTGGAGGGTGCTAG
>Glyma.14g083400.1.p sequence-type=predicted peptide transcript=Glyma.14g083400.1 locus=Glyma.14g083400 ID=Glyma.14g083400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVIVDSDYEGAAIEALGSLFKVTQVFLWDDGLQVSSSAERWKLDEADDNHGSDPVPDLIDLITPEDLELTKQLNELGLPLSFQTNKEKNGPVKGKKKGKLLKHPNTCHNPVDETLYEVSGEEIVSPAKFHDKTSSPLSCISMLGQSESSFLEGAMDIDMTQCAYGEGANSACCTGFASGVCREINNDNINQVATNDDQDDDFLISNDRVDLKTAPASDTGVSAGSHLKGAGVNYCGTEYDESLIDSECLEVSPIVGKNTDCDTIYNDDGAATCHPHSIESELHPVSSEGIECDRNDVSNNYAEHGDWMVVWDTFYERTYFYNIRTHTSTWDAPSGMEHLATGRYTESDDSKTLKASEEWGIQNSTKPPEETLIEENLEVKQHEEYLTESGVAVGNLVSDITTHGEDQSLNHSDGCHERSSCNDGVSCCLISNTLDHINSSNEGCIQAASEDNHTPLENMLIDMSGLDSKSDPFESKQGKKVKRRQRQRKLYNEAEDLHFQEMPEVYSAAVGKYWCQRYSLFSRFDDGVKLDEEGWFSVTPEVIARHQAIRCASGVIIDGFTGVGGNAIQFAQQCRHVIGIDIDPLKIEYARHNAAIYGVDDQIEFVVGDFFHLAPMLKADTVFLSPPWGGPDYVKAATYDLKTMLRPHDGYTLFNVAKEIASRVVMFLPRNINFNQLAELSLSSCPSWSLEVEKVYLNNKLKAITAYFSSTSGGGC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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